Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
| Showing page 244 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUSC | TCGA-60-2714-01A | TCGA-60-2714 | SLC20A2|FBXW7 | SLC20A2 | FBXW7 | 8 | 4 | -1 | -1 | 6 | 8 | 7 | 0.51 | 42358549 | 153247383 | tier1 | 5UTR-CDS | 16059 | NA | 0 |
| LUSC | TCGA-60-2708-01A | TCGA-60-2708 | SLC20A2|ZMAT4 | SLC20A2 | ZMAT4 | 8 | 8 | -1 | -1 | 58 | 39 | 37 | 0.32 | 42358549 | 40389757 | tier1 | 5UTR-CDS | 16062 | NA | 0 |
| PRAD | TCGA-VN-A88Q-01A | TCGA-VN-A88Q | SLC20A2|AC130352.1 | SLC20A2 | AC130352.1 | 8 | 8 | -1 | 1 | 3 | 11 | 8 | 0.093 | 42329620 | 12388452 | tier1 | Out-of-frame | 16055 | NA | 0 |
| ESCA | TCGA-L5-A4OW-01A | TCGA-L5-A4OW | STAT3|NOS2 | STAT3 | NOS2 | 17 | 17 | -1 | -1 | 4 | 78 | 72 | 0.21 | 40540297 | 26116714 | tier1 | 5UTR-CDS | 17015 | NA | 0 |
| PRAD | TCGA-EJ-5511-01A | TCGA-EJ-5511 | STAT3|ETV4 | STAT3 | ETV4 | 17 | 17 | -1 | -1 | 301 | 206 | 125 | 0.41 | 40468807 | 41611353 | tier1 | In-frame | 17014 | NA | 0 |
| LUSC | TCGA-77-7139-01A | TCGA-77-7139 | ADAM9|HTRA4 | ADAM9 | HTRA4 | 8 | 8 | 1 | 1 | 13 | 15 | 13 | 1 | 38884329 | 38839172 | tier1 | Out-of-frame | 419 | non-validated | 0.37765 |
| BLCA | TCGA-LT-A8JT-01A | TCGA-LT-A8JT | ADAM9|MTL5 | ADAM9 | MTL5 | 8 | 11 | 1 | -1 | 6 | 4 | 3 | 1.7 | 38928922 | 68483407 | tier1 | In-frame | 420 | NA | 0.3758 |
| BLCA | TCGA-XF-A8HG-01A | TCGA-XF-A8HG | ADAM9|UNC5D | ADAM9 | UNC5D | 8 | 8 | 1 | 1 | 7 | 6 | 5 | 0.34 | 38884329 | 35406810 | tier1 | Out-of-frame | 426 | NA | 0.37985 |
| BRCA | TCGA-D8-A1JK-01A | TCGA-D8-A1JK | ADAM9|CLYBL | ADAM9 | CLYBL | 8 | 13 | 1 | 1 | 15 | 6 | 5 | 0.78 | 38854679 | 100425078 | tier1 | Out-of-frame | 418 | NA | 0.37531 |
| BRCA | TCGA-WT-AB41-01A | TCGA-WT-AB41 | ADAM9|PROSC | ADAM9 | PROSC | 8 | 8 | 1 | 1 | 12 | 13 | 13 | 4.2 | 38865502 | 37623044 | tier1 | In-frame | 421 | NA | 0.37683 |
| LUAD | TCGA-50-5933-01A | TCGA-50-5933 | ADAM9|RNF170 | ADAM9 | RNF170 | 8 | 8 | 1 | -1 | 11 | 10 | 8 | 0.046 | 38854679 | 42743014 | tier1 | CDS-5UTR | 424 | NA | 0.37684 |
| LUAD | TCGA-44-7660-01A | TCGA-44-7660 | ADAM9|TACC1 | ADAM9 | TACC1 | 8 | 8 | 1 | 1 | 4 | 2 | 1 | 0.31 | 38865502 | 38602413 | tier3 | CDS-5UTR | 425 | NA | 0.37886 |
| LUSC | TCGA-21-1076-01A | TCGA-21-1076 | ADAM9|RNF170 | ADAM9 | RNF170 | 8 | 8 | 1 | -1 | 49 | 36 | 26 | 0.046 | 38865502 | 42716998 | tier2 | In-frame | 423 | non-validated | 0.37684 |
| PRAD | TCGA-EJ-5510-01A | TCGA-EJ-5510 | ADAM9|RGS20 | ADAM9 | RGS20 | 8 | 8 | 1 | 1 | 22 | 12 | 9 | 0.29 | 38854679 | 54791818 | tier1 | Out-of-frame | 422 | NA | 0.37634 |
| BRCA | TCGA-E2-A105-01A | TCGA-E2-A105 | ADAM18|LSM1 | ADAM18 | LSM1 | 8 | 8 | 1 | -1 | 7 | 11 | 11 | 0.34 | 39581426 | 38029551 | tier2 | Out-of-frame | 411 | NA | 0.35909 |
| LUSC | TCGA-98-A53B-01A | TCGA-98-A53B | GDNF|FYB | GDNF | FYB | 5 | 5 | -1 | -1 | 2 | 3 | 1 | 0.64 | 37834826 | 39119736 | tier3 | Out-of-frame | 7027 | NA | 0.37842 |
| SKCM | TCGA-ER-A195-06A | TCGA-ER-A195 | AXIN2|EIF2AK2 | AXIN2 | EIF2AK2 | 17 | 2 | -1 | -1 | 2 | 8 | 8 | 1.5 | 63524685 | 37342384 | tier3 | NA | 1836 | NA | 0.38656 |
| PAAD | TCGA-IB-AAUP-01A | TCGA-IB-AAUP | AXIN2|VWA3B | AXIN2 | VWA3B | 17 | 2 | -1 | 1 | 13 | 7 | 7 | 2.4 | 63553924 | 98872587 | tier1 | In-frame | 1837 | NA | 0.37429 |
| BRCA | TCGA-E9-A5FK-01A | TCGA-E9-A5FK | AHCYL1|DENND2D | AHCYL1 | DENND2D | 1 | 1 | 1 | -1 | 4 | 5 | 5 | 1 | 110527794 | 111737348 | tier1 | In-frame | 676 | NA | 0.35501 |
| LUAD | TCGA-80-5611-01A | TCGA-80-5611 | AHCYL1|LRRIQ3 | AHCYL1 | LRRIQ3 | 1 | 1 | 1 | -1 | 3 | 3 | 2 | 1.4 | 110527794 | 74575237 | tier1 | Out-of-frame | 678 | NA | 0.35209 |
|
Showing page 244 |
first page | previous page | next page | last page |
Copyright © 2020 University of Pennsylvania. All Rights Reserved.