Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-A7-A3IZ-01A | TCGA-A7-A3IZ | FNTA|OVOL1 | FNTA | OVOL1 | 8 | 11 | 1 | 1 | 3 | 3 | 3 | 0.69 | 42911689 | 65561502 | tier1 | Out-of-frame | 6633 | NA | 0.36793 |
| BRCA | TCGA-A2-A0EW-01A | TCGA-A2-A0EW | FNTA|ZMAT4 | FNTA | ZMAT4 | 8 | 8 | 1 | -1 | 4 | 2 | 2 | 2 | 42932507 | 40683199 | tier1 | CDS-5UTR | 6634 | NA | 0.35927 |
| LUAD | TCGA-69-7760-01A | TCGA-69-7760 | FNTA|KIAA0146 | FNTA | KIAA0146 | 8 | 8 | 1 | 1 | 2 | 4 | 3 | 0.91 | 42932507 | 48192450 | tier2 | Out-of-frame | 6632 | NA | 0.3605 |
| PAAD | TCGA-IB-7654-01A | TCGA-IB-7654 | COL3A1|ERBB3 | COL3A1 | ERBB3 | 2 | 12 | 1 | 1 | 2 | 11 | 10 | 1.2 | 189877472 | 56492035 | tier4 | 3UTR-5UTR | 4016 | NA | 0.38597 |
| LUAD | TCGA-50-8459-01A | TCGA-50-8459 | COL3A1|SUPT16H | COL3A1 | SUPT16H | 2 | 14 | 1 | -1 | 2 | 5 | 1 | 0.27 | 189877472 | 21829491 | tier3 | 3UTR-CDS | 4022 | NA | 0.38156 |
| COAD | TCGA-A6-5664-01A | TCGA-A6-5664 | COL3A1|PLAT | COL3A1 | PLAT | 2 | 8 | 1 | -1 | 2 | 31 | 25 | 0.15 | 189877472 | 42051245 | tier3 | NA | 4019 | NA | 0.37817 |
| TGCT | TCGA-2G-AALZ-01A | TCGA-2G-AALZ | COL3A1|PLAT | COL3A1 | PLAT | 2 | 8 | 1 | -1 | 2 | 69 | 54 | 0.15 | 189877472 | 42051245 | tier3 | NA | 4018 | NA | 0.37817 |
| LGG | TCGA-HT-7882-01A | TCGA-HT-7882 | COL3A1|C7 | COL3A1 | C7 | 2 | 5 | 1 | 1 | 2 | 29 | 28 | 0.006 | 189877472 | 40954982 | tier3 | NA | 4014 | NA | 0.37333 |
| CESC | TCGA-EK-A2RO-01A | TCGA-EK-A2RO | COL3A1|ANXA1 | COL3A1 | ANXA1 | 2 | 9 | 1 | 1 | 2 | 66 | 52 | 0.44 | 189877472 | 75772570 | tier3 | 3UTR-5UTR | 4013 | NA | 0.3814 |
| PAAD | TCGA-IB-7891-01A | TCGA-IB-7891 | COL3A1|MMP14 | COL3A1 | MMP14 | 2 | 14 | 1 | 1 | 2 | 1 | 1 | 0.74 | 189877472 | 23305829 | tier3 | NA | 4017 | NA | 0.37305 |
| PAAD | TCGA-2L-AAQA-01A | TCGA-2L-AAQA | COL3A1|STAT6 | COL3A1 | STAT6 | 2 | 12 | 1 | -1 | 2 | 34 | 31 | 0.23 | 189877472 | 57496773 | tier3 | NA | 4021 | NA | 0.38036 |
| ACC | TCGA-OR-A5J8-01A | TCGA-OR-A5J8 | COL3A1|CCT5 | COL3A1 | CCT5 | 2 | 5 | 1 | 1 | 2 | 61 | 43 | 0.73 | 189877472 | 10250033 | tier3 | 3UTR-5UTR | 4015 | NA | 0.37643 |
| PAAD | TCGA-IB-7651-01A | TCGA-IB-7651 | COL3A1|UTRN | COL3A1 | UTRN | 2 | 6 | 1 | 1 | 2 | 46 | 43 | 0.2 | 189877472 | 144665237 | tier3 | NA | 4023 | NA | 0.37865 |
| UCS | TCGA-NA-A5I1-01A | TCGA-NA-A5I1 | COL3A1|SEC63 | COL3A1 | SEC63 | 2 | 6 | 1 | -1 | 2 | 15 | 8 | 0.03 | 189877472 | 108214782 | tier3 | NA | 4020 | NA | 0.37339 |
| PRAD | TCGA-EJ-5516-01A | TCGA-EJ-5516 | ING2|IDH1 | ING2 | IDH1 | 4 | 2 | 1 | -1 | 9 | 9 | 8 | 0.36 | 184426520 | 209120313 | tier1 | NA | 8232 | NA | 0.36578 |
| BRCA | TCGA-AR-A0U3-01A | TCGA-AR-A0U3 | SLC20A2|TUSC3 | SLC20A2 | TUSC3 | 8 | 8 | -1 | 1 | 9 | 5 | 5 | 0.48 | 42396681 | 15531256 | tier1 | NA | 16061 | NA | 0 |
| LIHC | TCGA-DD-AAVZ-01A | TCGA-DD-AAVZ | SLC20A2|ADORA3 | SLC20A2 | ADORA3 | 8 | 1 | -1 | -1 | 59 | 80 | 76 | 3 | 42396681 | 112031489 | tier1 | NA | 16056 | NA | 0 |
| BRCA | TCGA-A7-A2KD-01A | TCGA-A7-A2KD | SLC20A2|DOCK8 | SLC20A2 | DOCK8 | 8 | 9 | -1 | 1 | 2 | 1 | 1 | 3.4 | 42286276 | 304581 | tier2 | Out-of-frame | 16058 | NA | 0 |
| BRCA | TCGA-A8-A08P-01A | TCGA-A8-A08P | SLC20A2|HIP1 | SLC20A2 | HIP1 | 8 | 7 | -1 | -1 | 11 | 11 | 10 | 1 | 42286276 | 75172293 | tier1 | In-frame | 16060 | NA | 0 |
| HNSC | TCGA-CV-7099-01A | TCGA-CV-7099 | SLC20A2|ANKH | SLC20A2 | ANKH | 8 | 5 | -1 | -1 | 3 | 2 | 2 | 1.1 | 42286276 | 14769300 | tier1 | In-frame | 16057 | NA | 0 |
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