Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-BH-A0C3-01A | TCGA-BH-A0C3 | MAP4K2|NETO2 | MAP4K2 | NETO2 | 11 | 16 | -1 | -1 | 4 | 1 | 1 | 0.37 | 64566266 | 47143622 | tier3 | Out-of-frame | 9904 | NA | 0.38032 |
| PRAD | TCGA-ZG-A8QZ-01A | TCGA-ZG-A8QZ | SETD5|GADL1 | SETD5 | GADL1 | 3 | 3 | 1 | -1 | 27 | 42 | 38 | 0.026 | 9439661 | 30898633 | tier1 | 5UTR-CDS | 15703 | NA | 0 |
| BLCA | TCGA-GU-AATP-01A | TCGA-GU-AATP | SETD5|RAD18 | SETD5 | RAD18 | 3 | 3 | 1 | -1 | 3 | 4 | 3 | 0.12 | 9490314 | 9005277 | tier1 | NA | 15706 | NA | 0 |
| BRCA | TCGA-EW-A6SA-01A | TCGA-EW-A6SA | SETD5|ATG7 | SETD5 | ATG7 | 3 | 3 | 1 | 1 | 82 | 73 | 17 | 0.35 | 9506356 | 11596285 | tier1 | In-frame | 15702 | NA | 0 |
| BRCA | TCGA-LL-A8F5-01A | TCGA-LL-A8F5 | SETD5|LMCD1 | SETD5 | LMCD1 | 3 | 3 | 1 | 1 | 12 | 15 | 14 | 0.037 | 9483929 | 8574423 | tier1 | In-frame | 15704 | NA | 0 |
| PRAD | TCGA-HC-7233-01A | TCGA-HC-7233 | SETD5|MCM7 | SETD5 | MCM7 | 3 | 7 | 1 | -1 | 8 | 5 | 5 | 0.21 | 9439661 | 99696338 | tier1 | 5UTR-CDS | 15705 | non-validated | 0 |
| PRAD | TCGA-CH-5751-01A | TCGA-CH-5751 | SETD5|RP11-15G16.1 | SETD5 | RP11-15G16.1 | 3 | 8 | 1 | 1 | 2 | 1 | 1 | 1.5 | 9439661 | 41297356 | tier3 | 5UTR-CDS | 15707 | NA | 0 |
| GBM | TCGA-06-5856-01A | TCGA-06-5856 | VASN|RBFOX1 | VASN | RBFOX1 | 16 | 16 | 1 | 1 | 6 | 22 | 17 | 0.41 | 4421994 | 7759058 | tier1 | 5UTR-CDS | 19510 | NA | 0 |
| ACC | TCGA-PK-A5HA-01A | TCGA-PK-A5HA | PXK|RPP14 | PXK | RPP14 | 3 | 3 | 1 | 1 | 12 | 2 | 2 | 0.34 | 58318817 | 58296234 | tier1 | Out-of-frame | 13986 | NA | 0 |
| LIHC | TCGA-DD-A73F-01A | TCGA-DD-A73F | PXK|FLNB | PXK | FLNB | 3 | 3 | 1 | 1 | 56 | 22 | 20 | 3.3 | 58318817 | 58145281 | tier1 | In-frame | 13984 | NA | 0 |
| OV | TCGA-13-0893-01B | TCGA-13-0893 | PXK|RPP14 | PXK | RPP14 | 3 | 3 | 1 | 1 | 5 | 2 | 2 | 0.34 | 58318817 | 58296036 | tier1 | CDS-5UTR | 13985 | NA | 0 |
| LUSC | TCGA-58-8392-01A | TCGA-58-8392 | MFSD2A|SLC5A9 | MFSD2A | SLC5A9 | 1 | 1 | 1 | 1 | 13 | 8 | 8 | 0.88 | 40424497 | 48703351 | tier2 | In-frame | 10293 | NA | 0.32759 |
| LGG | TCGA-CS-6188-01A | TCGA-CS-6188 | MFSD2A|LAPTM5 | MFSD2A | LAPTM5 | 1 | 1 | 1 | -1 | 191 | 68 | 59 | 0.6 | 40421057 | 31215396 | tier1 | In-frame | 10292 | NA | 0.34981 |
| GBM | TCGA-32-2615-01A | TCGA-32-2615 | ATG4B|DTYMK | ATG4B | DTYMK | 2 | 2 | 1 | -1 | 28 | 82 | 68 | 0.5 | 242590750 | 242615652 | tier1 | Out-of-frame | 1624 | NA | 0.35328 |
| MESO | TCGA-SH-A7BD-01A | TCGA-SH-A7BD | TNXB|DDR1 | TNXB | DDR1 | 6 | 6 | -1 | 1 | 2 | 5 | 5 | 0.56 | 32029174 | 30865156 | tier3 | Out-of-frame | 18420 | NA | 0 |
| HNSC | TCGA-BA-4078-01A | TCGA-BA-4078 | TNXB|CMAHP | TNXB | CMAHP | 6 | 6 | -1 | -1 | 5 | 2 | 1 | 0.1 | 32082771 | 25115328 | tier2 | NA | 18419 | NA | 0 |
| LUAD | TCGA-44-7670-01A | TCGA-44-7670 | SFTPC|SUPT16H | SFTPC | SUPT16H | 8 | 14 | 1 | -1 | 2 | 20 | 7 | 100 | 22021989 | 21829491 | tier4 | 3UTR-CDS | 15768 | NA | 0 |
| LUAD | TCGA-55-6971-01A | TCGA-55-6971 | SFTPC|CHD1 | SFTPC | CHD1 | 8 | 5 | 1 | -1 | 2 | 31 | 5 | 2.7 | 22021989 | 98219587 | tier4 | NA | 15767 | NA | 0 |
| LUAD | TCGA-44-2657-01A | TCGA-44-2657 | SFTPC|ZNFX1 | SFTPC | ZNFX1 | 8 | 20 | 1 | -1 | 2 | 10 | 3 | 0.27 | 22021989 | 47863418 | tier4 | 3UTR-CDS | 15769 | NA | 0 |
| SKCM | TCGA-EB-A82B-01A | TCGA-EB-A82B | FEN1|GDPD4 | FEN1 | GDPD4 | 11 | 11 | 1 | -1 | 9 | 8 | 8 | 0.72 | 61560500 | 76940277 | tier1 | 5UTR-CDS | 6418 | NA | 0.36759 |
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