Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-QU-A6IP-01A | TCGA-QU-A6IP | KLK2|ZNFX1 | KLK2 | ZNFX1 | 19 | 20 | 1 | -1 | 2 | 24 | 17 | 0.018 | 51383822 | 47863418 | tier4 | 3UTR-CDS | 9086 | NA | 0.36668 |
| LUAD | TCGA-80-5608-01A | TCGA-80-5608 | ANGPTL4|CLCN3 | ANGPTL4 | CLCN3 | 19 | 4 | 1 | 1 | 2 | 2 | 2 | 5.5 | 8439257 | 170623929 | tier3 | NA | 895 | NA | 0.36738 |
| BLCA | TCGA-GV-A3QF-01A | TCGA-GV-A3QF | TK1|DNAH17 | TK1 | DNAH17 | 17 | 17 | -1 | -1 | 19 | 13 | 10 | 0.79 | 76171131 | 76423189 | tier1 | In-frame | 17849 | NA | 0 |
| HNSC | TCGA-CV-6940-01A | TCGA-CV-6940 | ITFG3|LUC7L | ITFG3 | LUC7L | 16 | 16 | 1 | -1 | 14 | 7 | 7 | 2.9 | 299653 | 258187 | tier1 | 5UTR-CDS | 8370 | NA | 0.35401 |
| LIHC | TCGA-G3-A25U-01A | TCGA-G3-A25U | ITFG3|ALDOB | ITFG3 | ALDOB | 16 | 9 | 1 | -1 | 2 | 2 | 1 | 0.08 | 311504 | 104198056 | tier3 | NA | 8369 | NA | 0.34908 |
| LGG | TCGA-TM-A84I-01A | TCGA-TM-A84I | ABCA3|XRCC6BP1 | ABCA3 | XRCC6BP1 | 16 | 12 | -1 | 1 | 2 | 2 | 2 | 0.99 | 2358451 | 58340778 | tier2 | Out-of-frame | 42 | NA | 0.35636 |
| BRCA | TCGA-AO-A1KR-01A | TCGA-AO-A1KR | SLC3A2|NXF1 | SLC3A2 | NXF1 | 11 | 11 | 1 | -1 | 15 | 10 | 10 | 0.24 | 62623853 | 62562479 | tier1 | In-frame | 16218 | NA | 0 |
| HNSC | TCGA-CV-6441-01A | TCGA-CV-6441 | SLC3A2|POLR2G | SLC3A2 | POLR2G | 11 | 11 | 1 | 1 | 29 | 23 | 21 | 0.24 | 62639141 | 62532654 | tier1 | Out-of-frame | 16219 | NA | 0 |
| SKCM | TCGA-FS-A1ZK-06A | TCGA-FS-A1ZK | SLC3A2|GRAP2 | SLC3A2 | GRAP2 | 11 | 22 | 1 | 1 | 76 | 49 | 44 | 4 | 62653080 | 40365415 | tier4 | In-frame | 16217 | validated | 0 |
| UCS | TCGA-N8-A4PI-01A | TCGA-N8-A4PI | SLC3A2|ASRGL1 | SLC3A2 | ASRGL1 | 11 | 11 | 1 | 1 | 12 | 8 | 8 | 0.19 | 62623853 | 62156605 | tier1 | Out-of-frame | 16216 | NA | 0 |
| BRCA | TCGA-AR-A1AS-01A | TCGA-AR-A1AS | CTNNB1|SLC38A5 | CTNNB1 | SLC38A5 | 3 | X | 1 | -1 | 2 | 10 | 4 | 0.1 | 41281934 | 48327824 | tier3 | 3UTR-5UTR | 4362 | NA | 0.37775 |
| BRCA | TCGA-E2-A14N-01A | TCGA-E2-A14N | CTNNB1|THRB | CTNNB1 | THRB | 3 | 3 | 1 | -1 | 3 | 5 | 5 | 0.023 | 41241161 | 24270492 | tier1 | 5UTR-5UTR | 4364 | NA | 0.37814 |
| LUSC | TCGA-L3-A524-01A | TCGA-L3-A524 | CTNNB1|TCOF1 | CTNNB1 | TCOF1 | 3 | 5 | 1 | 1 | 2 | 11 | 2 | 0.2 | 41281934 | 149777917 | tier4 | 3UTR-CDS | 4363 | NA | 0.37566 |
| MESO | TCGA-YS-A95C-01A | TCGA-YS-A95C | CTNNB1|DOCK3 | CTNNB1 | DOCK3 | 3 | 3 | 1 | 1 | 4 | 7 | 6 | 1.1 | 41280845 | 50927457 | tier1 | 3UTR-CDS | 4359 | NA | 0.38235 |
| SKCM | TCGA-D3-A2J6-06A | TCGA-D3-A2J6 | CTNNB1|IQCE | CTNNB1 | IQCE | 3 | 7 | 1 | 1 | 2 | 39 | 33 | 3.2 | 41281934 | 2641075 | tier4 | 3UTR-CDS | 4361 | NA | 0.38171 |
| UCS | TCGA-ND-A4WF-01A | TCGA-ND-A4WF | CTNNB1|IGF2BP2 | CTNNB1 | IGF2BP2 | 3 | 3 | 1 | -1 | 8 | 6 | 4 | 0.14 | 41241161 | 185416135 | tier1 | 5UTR-CDS | 4360 | NA | 0.38022 |
| LIHC | TCGA-DD-A11C-01A | TCGA-DD-A11C | ULK4|CCDC111 | ULK4 | CCDC111 | 3 | 4 | -1 | 1 | 3 | 3 | 3 | 0.11 | 41496988 | 185606730 | tier1 | Out-of-frame | 19232 | NA | 0 |
| LUAD | TCGA-44-6778-01A | TCGA-44-6778 | ULK4|ANO10 | ULK4 | ANO10 | 3 | 3 | -1 | -1 | 13 | 6 | 5 | 0.043 | 41925366 | 43408466 | tier1 | In-frame | 19231 | NA | 0 |
| UCEC | TCGA-D1-A3JP-01A | TCGA-D1-A3JP | ULK4|FBXO44 | ULK4 | FBXO44 | 3 | 1 | -1 | 1 | 3 | 1 | 1 | 1.9 | 41746549 | 11715863 | tier3 | CDS-5UTR | 19233 | NA | 0 |
| HNSC | TCGA-BA-6873-01A | TCGA-BA-6873 | LTBP3|CERS3 | LTBP3 | CERS3 | 11 | 15 | -1 | -1 | 2 | 4 | 3 | 0.62 | 65321172 | 100943070 | tier2 | In-frame | 9656 | non-validated | 0.36373 |
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