Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| TGCT | TCGA-SB-A6J6-01A | TCGA-SB-A6J6 | EEF2|DDX21 | EEF2 | DDX21 | 19 | 10 | -1 | 1 | 2 | 24 | 18 | 0.043 | 3976055 | 70723858 | tier4 | NA | 5300 | NA | 0.37112 |
| TGCT | TCGA-XE-AAO3-01A | TCGA-XE-AAO3 | EEF2|SEC63 | EEF2 | SEC63 | 19 | 6 | -1 | -1 | 2 | 133 | 122 | 2.5 | 3976055 | 108214782 | tier3 | NA | 5314 | NA | 0.3691 |
| THCA | TCGA-EM-A1YA-01A | TCGA-EM-A1YA | EEF2|ANKS1A | EEF2 | ANKS1A | 19 | 6 | -1 | 1 | 2 | 33 | 28 | 0.2 | 3976055 | 34977682 | tier3 | NA | 5292 | NA | 0.37682 |
| THCA | TCGA-ET-A3BO-01A | TCGA-ET-A3BO | EEF2|ARFGEF2 | EEF2 | ARFGEF2 | 19 | 20 | -1 | 1 | 2 | 41 | 39 | 0.29 | 3976055 | 47615777 | tier3 | 3UTR-CDS | 5295 | NA | 0.37199 |
| UVM | TCGA-V4-A9E7-01A | TCGA-V4-A9E7 | EEF2|PABPC1 | EEF2 | PABPC1 | 19 | 8 | -1 | -1 | 2 | 1 | 1 | 0.032 | 3972316 | 101734220 | tier3 | NA | 5311 | NA | 0.3739 |
| UCEC | TCGA-B5-A5OD-01A | TCGA-B5-A5OD | SLC43A2|SMYD4 | SLC43A2 | SMYD4 | 17 | 17 | -1 | -1 | 2 | 4 | 3 | 1.6 | 1516489 | 1686770 | tier2 | Out-of-frame | 16228 | NA | 0 |
| BRCA | TCGA-B6-A0X1-01A | TCGA-B6-A0X1 | SLC43A2|SCARF1 | SLC43A2 | SCARF1 | 17 | 17 | -1 | -1 | 5 | 3 | 2 | 0.11 | 1486498 | 1538911 | tier1 | Out-of-frame | 16226 | NA | 0 |
| BRCA | TCGA-A8-A06Z-01A | TCGA-A8-A06Z | SLC43A2|SMG6 | SLC43A2 | SMG6 | 17 | 17 | -1 | -1 | 14 | 17 | 17 | 2.4 | 1516489 | 2187029 | tier1 | In-frame | 16227 | NA | 0 |
| UCEC | TCGA-AX-A2H4-01A | TCGA-AX-A2H4 | TRPV3|UBE2G1 | TRPV3 | UBE2G1 | 17 | 17 | -1 | -1 | 7 | 4 | 4 | 0.022 | 3438867 | 4192703 | tier1 | In-frame | 18739 | NA | 0 |
| HNSC | TCGA-CR-7374-01A | TCGA-CR-7374 | HSD11B1L|SAFB | HSD11B1L | SAFB | 19 | 19 | 1 | 1 | 2 | 2 | 2 | 0.014 | 5687679 | 5664033 | tier4 | In-frame | 7971 | NA | 0.37337 |
| BRCA | TCGA-AN-A0FX-01A | TCGA-AN-A0FX | GGT6|AC091153.1 | GGT6 | AC091153.1 | 17 | 17 | -1 | -1 | 12 | 11 | 10 | 0.031 | 4463677 | 4580107 | tier1 | Out-of-frame | 7054 | NA | 0.32041 |
| PRAD | TCGA-HC-8256-01A | TCGA-HC-8256 | KLK4|ZNF827 | KLK4 | ZNF827 | 19 | 4 | -1 | -1 | 2 | 49 | 45 | 0.029 | 51409608 | 146859787 | tier3 | 3UTR-5UTR | 9087 | NA | 0.35629 |
| PRAD | TCGA-V1-A9O5-01A | TCGA-V1-A9O5 | KLK2|FGFR2 | KLK2 | FGFR2 | 19 | 10 | 1 | -1 | 543 | 425 | 408 | 1.7 | 51376775 | 123310973 | tier1 | In-frame | 9079 | NA | 0.3851 |
| UVM | TCGA-V4-A9EA-01A | TCGA-V4-A9EA | KLK2|FGFR2 | KLK2 | FGFR2 | 19 | 10 | 1 | -1 | 5 | 7 | 7 | 1.7 | 51376775 | 123310973 | tier1 | In-frame | 9081 | NA | 0.3851 |
| PRAD | TCGA-EJ-5526-01A | TCGA-EJ-5526 | KLK2|PLAT | KLK2 | PLAT | 19 | 8 | 1 | -1 | 2 | 12 | 9 | 0.023 | 51383822 | 42051245 | tier3 | NA | 9084 | NA | 0.37624 |
| PRAD | TCGA-EJ-7782-01A | TCGA-EJ-7782 | KLK2|STAT6 | KLK2 | STAT6 | 19 | 12 | 1 | -1 | 2 | 8 | 7 | 1.4 | 51383822 | 57496773 | tier3 | NA | 9085 | NA | 0.3804 |
| PRAD | TCGA-HC-7230-01A | TCGA-HC-7230 | KLK2|CCT5 | KLK2 | CCT5 | 19 | 5 | 1 | 1 | 2 | 4 | 4 | 0.38 | 51383822 | 10250033 | tier3 | 3UTR-5UTR | 9077 | NA | 0.37598 |
| PRAD | TCGA-ZG-A9LY-01A | TCGA-ZG-A9LY | KLK2|ETV1 | KLK2 | ETV1 | 19 | 7 | 1 | -1 | 2029 | 1927 | 1808 | 0.057 | 51376775 | 13971374 | tier1 | Out-of-frame | 9078 | NA | 0.3819 |
| PRAD | TCGA-CH-5753-01A | TCGA-CH-5753 | KLK2|NDUFV1 | KLK2 | NDUFV1 | 19 | 11 | 1 | 1 | 2 | 3 | 2 | 2 | 51383822 | 67375697 | tier3 | NA | 9082 | NA | 0.36756 |
| PRAD | TCGA-EJ-7793-01A | TCGA-EJ-7793 | KLK2|NDUFV1 | KLK2 | NDUFV1 | 19 | 11 | 1 | 1 | 2 | 35 | 33 | 2 | 51383822 | 67375697 | tier3 | NA | 9083 | NA | 0.36756 |
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