Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| DLBC | TCGA-GS-A9TT-01A | TCGA-GS-A9TT | EEF2|TYK2 | EEF2 | TYK2 | 19 | 19 | -1 | -1 | 2 | 10 | 10 | 0.49 | 3976055 | 10491352 | tier3 | 3UTR-5UTR | 5320 | NA | 0.37662 |
| BLCA | TCGA-CF-A27C-01A | TCGA-CF-A27C | EEF2|CLCN3 | EEF2 | CLCN3 | 19 | 4 | -1 | 1 | 2 | 81 | 68 | 2.6 | 3976055 | 170623929 | tier3 | NA | 5299 | non-validated | 0.37264 |
| HNSC | TCGA-BB-4223-01A | TCGA-BB-4223 | EEF2|CLCN3 | EEF2 | CLCN3 | 19 | 4 | -1 | 1 | 2 | 6 | 5 | 2.6 | 3976055 | 170623929 | tier4 | NA | 5298 | NA | 0.37264 |
| KIRC | TCGA-CW-5581-01A | TCGA-CW-5581 | EEF2|SIAE | EEF2 | SIAE | 19 | 11 | -1 | -1 | 2 | 3 | 3 | 2.2 | 3976055 | 124543777 | tier3 | 3UTR-5UTR | 5315 | NA | 0.36454 |
| SARC | TCGA-KD-A5QU-01A | TCGA-KD-A5QU | EEF2|LAMA4 | EEF2 | LAMA4 | 19 | 6 | -1 | -1 | 2 | 5 | 3 | 0.74 | 3976055 | 112507969 | tier3 | 3UTR-CDS | 5309 | NA | 0.3768 |
| SARC | TCGA-K1-A3PO-01A | TCGA-K1-A3PO | EEF2|SMARCA4 | EEF2 | SMARCA4 | 19 | 19 | -1 | 1 | 2401 | 2401 | 2216 | 0.19 | 3982805 | 11151983 | tier1 | In-frame | 5316 | NA | 0.38062 |
| STAD | TCGA-CG-4301-01A | TCGA-CG-4301 | EEF2|LIPF | EEF2 | LIPF | 19 | 10 | -1 | 1 | 2 | 1 | 1 | 0.57 | 3972316 | 90424198 | tier3 | NA | 5310 | NA | 0.36733 |
| KICH | TCGA-KL-8323-01A | TCGA-KL-8323 | EEF2|THSD4 | EEF2 | THSD4 | 19 | 15 | -1 | 1 | 2 | 119 | 108 | 0.002 | 3976055 | 72072881 | tier4 | 3UTR-CDS | 5318 | non-validated | 0.3688 |
| KICH | TCGA-KL-8342-01A | TCGA-KL-8342 | EEF2|THSD4 | EEF2 | THSD4 | 19 | 15 | -1 | 1 | 2 | 107 | 91 | 0.002 | 3976055 | 72072881 | tier3 | 3UTR-CDS | 5319 | NA | 0.3688 |
| LUAD | TCGA-44-5644-01A | TCGA-44-5644 | EEF2|THSD4 | EEF2 | THSD4 | 19 | 15 | -1 | 1 | 2 | 60 | 47 | 0.002 | 3976055 | 72072881 | tier4 | 3UTR-CDS | 5317 | NA | 0.3688 |
| ACC | TCGA-OR-A5KT-01A | TCGA-OR-A5KT | EEF2|SEC63 | EEF2 | SEC63 | 19 | 6 | -1 | -1 | 2 | 88 | 67 | 2.5 | 3976055 | 108214782 | tier3 | NA | 5313 | NA | 0.3691 |
| COAD | TCGA-CM-4747-01A | TCGA-CM-4747 | EEF2|DDX27 | EEF2 | DDX27 | 19 | 20 | -1 | 1 | 2 | 28 | 20 | 0.3 | 3976055 | 47849303 | tier3 | NA | 5302 | NA | 0.37071 |
| KICH | TCGA-KM-8639-01A | TCGA-KM-8639 | EEF2|ANKS1A | EEF2 | ANKS1A | 19 | 6 | -1 | 1 | 2 | 86 | 77 | 0.2 | 3976055 | 34977682 | tier3 | NA | 5293 | non-validated | 0.37682 |
| KICH | TCGA-KL-8332-01A | TCGA-KL-8332 | EEF2|ARFGEF2 | EEF2 | ARFGEF2 | 19 | 20 | -1 | 1 | 2 | 119 | 103 | 0.29 | 3976055 | 47615777 | tier4 | 3UTR-CDS | 5296 | non-validated | 0.37199 |
| KIRP | TCGA-A4-A5Y1-01A | TCGA-A4-A5Y1 | EEF2|ARFGEF2 | EEF2 | ARFGEF2 | 19 | 20 | -1 | 1 | 2 | 54 | 37 | 0.29 | 3976055 | 47615777 | tier3 | 3UTR-CDS | 5294 | NA | 0.37199 |
| LUAD | TCGA-86-A4D0-01A | TCGA-86-A4D0 | EEF2|CBS | EEF2 | CBS | 19 | 21 | -1 | -1 | 2 | 123 | 87 | 0.024 | 3976055 | 44476011 | tier4 | NA | 5297 | NA | 0.36792 |
| LUAD | TCGA-86-6851-01A | TCGA-86-6851 | EEF2|PLEKHA5 | EEF2 | PLEKHA5 | 19 | 12 | -1 | 1 | 2 | 52 | 52 | 0.73 | 3976055 | 19441012 | tier3 | NA | 5312 | NA | 0.36912 |
| SARC | TCGA-HB-A3YV-01A | TCGA-HB-A3YV | EEF2|EEA1 | EEF2 | EEA1 | 19 | 12 | -1 | -1 | 2 | 60 | 49 | 3.9 | 3976055 | 93229203 | tier3 | NA | 5303 | NA | 0.37534 |
| STAD | TCGA-BR-8589-01A | TCGA-BR-8589 | EEF2|DDX27 | EEF2 | DDX27 | 19 | 20 | -1 | 1 | 2 | 5 | 2 | 0.3 | 3976055 | 47849303 | tier4 | NA | 5301 | NA | 0.37071 |
| STAD | TCGA-BR-8680-01A | TCGA-BR-8680 | EEF2|FAR1 | EEF2 | FAR1 | 19 | 11 | -1 | 1 | 2 | 16 | 5 | 0.65 | 3976055 | 13744912 | tier3 | NA | 5308 | NA | 0.36948 |
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