TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
THCA	TCGA-BJ-A291-01A	TCGA-BJ-A291	IGF2\|SNW1	IGF2	SNW1	11	14	-1	-1	2	79	57	0.43	2150348	78189203	tier4	3UTR-CDS	8102	NA	0.36989
UCS	TCGA-N6-A4VG-01A	TCGA-N6-A4VG	IGF2\|CCT5	IGF2	CCT5	11	5	-1	1	3	20	15	0.06	2150351	10250033	tier1	3UTR-5UTR	8096	NA	0.37172
UCS	TCGA-N5-A4R8-01A	TCGA-N5-A4R8	IGF2\|DDX27	IGF2	DDX27	11	20	-1	1	2	10	2	0.53	2150348	47849303	tier4	NA	8097	NA	0.37017
UCS	TCGA-N8-A4PN-01A	TCGA-N8-A4PN	IGF2\|DDX27	IGF2	DDX27	11	20	-1	1	2	227	197	0.53	2150351	47849303	tier3	NA	8098	NA	0.37017
UCS	TCGA-NG-A4VU-01A	TCGA-NG-A4VU	IGF2\|MTHFD1	IGF2	MTHFD1	11	14	-1	1	2	5	1	0.056	2150351	64891522	tier4	3UTR-CDS	8101	NA	0.36584
UCS	TCGA-N5-A4RO-01A	TCGA-N5-A4RO	IGF2\|YY1	IGF2	YY1	11	14	-1	1	2	51	42	0.11	2150351	100728641	tier3	3UTR-CDS	8103	NA	0.38283
COAD	TCGA-AA-A02K-01A	TCGA-AA-A02K	CDK12\|CACNB1	CDK12	CACNB1	17	17	1	-1	16	12	10	0.29	37646986	37347846	tier1	Out-of-frame	3402	NA	0.35879
BRCA	TCGA-EW-A6S9-01A	TCGA-EW-A6S9	CDK12\|JAK2	CDK12	JAK2	17	9	1	1	25	44	43	0.003	37628016	5126333	tier1	Out-of-frame	3406	NA	0.38116
BRCA	TCGA-3C-AALI-01A	TCGA-3C-AALI	CDK12\|FAM20A	CDK12	FAM20A	17	17	1	-1	19	9	9	0.36	37628016	66551884	tier1	In-frame	3403	NA	0.33511
BRCA	TCGA-C8-A12M-01A	TCGA-C8-A12M	CDK12\|AKAP1	CDK12	AKAP1	17	17	1	1	10	15	14	1.2	37628016	55187386	tier1	Out-of-frame	3401	NA	0.35998
BLCA	TCGA-UY-A9PD-01A	TCGA-UY-A9PD	CDK12\|TAF15	CDK12	TAF15	17	17	1	1	20	19	18	0.18	37682569	34169371	tier1	In-frame	3410	NA	0.37236
BLCA	TCGA-ZF-AA4T-01A	TCGA-ZF-AA4T	CDK12\|IKZF3	CDK12	IKZF3	17	17	1	-1	48	50	48	0.067	37657692	37988404	tier2	Out-of-frame	3405	NA	0.3724
BLCA	TCGA-ZF-AA4T-01A	TCGA-ZF-AA4T	CDK12\|PLXDC1	CDK12	PLXDC1	17	17	1	-1	9	6	5	0.15	37619370	37265644	tier1	Out-of-frame	3408	NA	0.341
BRCA	TCGA-3C-AALI-01A	TCGA-3C-AALI	CDK12\|AC103810.1	CDK12	AC103810.1	17	17	1	-1	9	11	11	0.13	37619370	62825367	tier1	CDS-5UTR	3400	NA	0
BRCA	TCGA-AO-A0JM-01A	TCGA-AO-A0JM	CDK12\|FBXL20	CDK12	FBXL20	17	17	1	-1	12	2	2	0.021	37628016	37439108	tier1	In-frame	3404	non-validated	0.33249
OV	TCGA-09-1673-01A	TCGA-09-1673	CDK12\|SMG6	CDK12	SMG6	17	17	1	-1	7	2	2	1.9	37657692	1985250	tier1	Out-of-frame	3409	NA	0.35126
PRAD	TCGA-EJ-5525-01A	TCGA-EJ-5525	CDK12\|MED1	CDK12	MED1	17	17	1	-1	3	2	2	1.7	37619370	37571592	tier1	Out-of-frame	3407	NA	0.35216
LUSC	TCGA-85-8287-01A	TCGA-85-8287	ENGASE\|RBFOX3	ENGASE	RBFOX3	17	17	1	-1	8	2	2	0.002	77081816	77086967	tier1	In-frame	5585	NA	0
BRCA	TCGA-EW-A3U0-01A	TCGA-EW-A3U0	RRM1\|STIM1	RRM1	STIM1	11	11	1	1	48	23	23	0.13	4116261	4107707	tier1	In-frame	15130	non-validated	0
PRAD	TCGA-V1-A8MK-01A	TCGA-V1-A8MK	OR51E2\|C17orf48	OR51E2	C17orf48	11	17	-1	1	2	6	1	1.4	4701401	10608227	tier3	3UTR-5UTR	12042	NA	0

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