Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
| Showing page 236 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| HNSC | TCGA-BB-7871-01A | TCGA-BB-7871 | HSP90B1|UTRN | HSP90B1 | UTRN | 12 | 6 | 1 | 1 | 2 | 16 | 10 | 0.03 | 104341704 | 144665237 | tier3 | NA | 7989 | NA | 0.38191 |
| DLBC | TCGA-GS-A9U3-01A | TCGA-GS-A9U3 | B2M|CCT5 | B2M | CCT5 | 15 | 5 | 1 | 1 | 2 | 1 | 1 | 0.46 | 45010359 | 10250033 | tier3 | 3UTR-5UTR | 1847 | NA | 0.37327 |
| SKCM | TCGA-ER-A198-06A | TCGA-ER-A198 | B2M|PPP4R1 | B2M | PPP4R1 | 15 | 18 | 1 | -1 | 331 | 135 | 126 | 1.7 | 45003811 | 9562073 | tier1 | Out-of-frame | 1848 | NA | 0.36607 |
| BRCA | TCGA-A2-A04T-01A | TCGA-A2-A04T | SCNN1G|COL27A1 | SCNN1G | COL27A1 | 16 | 9 | 1 | 1 | 15 | 6 | 5 | 0.97 | 23224484 | 116924995 | tier1 | In-frame | 15432 | non-validated | 0 |
| LGG | TCGA-S9-A7R2-01A | TCGA-S9-A7R2 | XRCC6BP1|HIGD1C | XRCC6BP1 | HIGD1C | 12 | 12 | 1 | 1 | 23 | 11 | 9 | 100 | 58340859 | 51354751 | tier1 | Out-of-frame | 19987 | NA | 0 |
| BRCA | TCGA-E2-A1LA-01A | TCGA-E2-A1LA | SMAD3|SENP8 | SMAD3 | SENP8 | 15 | 15 | 1 | 1 | 5 | 5 | 5 | 1.4 | 67358698 | 72431918 | tier1 | CDS-5UTR | 16344 | NA | 0 |
| STAD | TCGA-CD-A486-01A | TCGA-CD-A486 | SMAD3|IL17RA | SMAD3 | IL17RA | 15 | 22 | 1 | 1 | 2 | 23 | 22 | 1.9 | 67358698 | 17577952 | tier2 | Out-of-frame | 16343 | NA | 0 |
| BLCA | TCGA-GU-A42Q-01A | TCGA-GU-A42Q | SMAD3|AAGAB | SMAD3 | AAGAB | 15 | 15 | 1 | -1 | 39 | 38 | 33 | 2.2 | 67430438 | 67529158 | tier1 | Out-of-frame | 16337 | NA | 0 |
| BRCA | TCGA-A7-A26G-01A | TCGA-A7-A26G | SMAD3|DIS3L | SMAD3 | DIS3L | 15 | 15 | 1 | 1 | 11 | 17 | 17 | 100 | 67358698 | 66604062 | tier1 | Out-of-frame | 16341 | validated | 0 |
| KIRC | TCGA-CW-6087-01A | TCGA-CW-6087 | SMAD3|DLGAP4 | SMAD3 | DLGAP4 | 15 | 20 | 1 | 1 | 9 | 5 | 5 | 0.027 | 67358698 | 35125108 | tier1 | Out-of-frame | 16342 | NA | 0 |
| LUAD | TCGA-05-4427-01A | TCGA-05-4427 | SMAD3|SMAD6 | SMAD3 | SMAD6 | 15 | 15 | 1 | 1 | 8 | 6 | 5 | 0.18 | 67358698 | 67073335 | tier1 | Out-of-frame | 16345 | NA | 0 |
| SARC | TCGA-K1-A42X-01A | TCGA-K1-A42X | SMAD3|AAGAB | SMAD3 | AAGAB | 15 | 15 | 1 | -1 | 58 | 22 | 21 | 2.2 | 67358698 | 67495236 | tier1 | Out-of-frame | 16338 | NA | 0 |
| SARC | TCGA-VT-A80J-01A | TCGA-VT-A80J | SMAD3|C15orf44 | SMAD3 | C15orf44 | 15 | 15 | 1 | -1 | 11 | 8 | 8 | 0.17 | 67358698 | 65877226 | tier1 | Out-of-frame | 16340 | NA | 0 |
| STAD | TCGA-BR-8289-01A | TCGA-BR-8289 | SMAD3|SMAD6 | SMAD3 | SMAD6 | 15 | 15 | 1 | 1 | 10 | 86 | 77 | 0.18 | 67358698 | 67073335 | tier1 | Out-of-frame | 16346 | NA | 0 |
| BLCA | TCGA-DK-A3IM-01A | TCGA-DK-A3IM | MARS|NOP2 | MARS | NOP2 | 12 | 12 | 1 | -1 | 9 | 5 | 4 | 0.31 | 57898082 | 6673112 | tier1 | In-frame | 10012 | NA | 0.36643 |
| SARC | TCGA-DX-A1L0-01A | TCGA-DX-A1L0 | MARS|MSRB3 | MARS | MSRB3 | 12 | 12 | 1 | 1 | 16 | 6 | 6 | 0.46 | 57898082 | 65881784 | tier1 | NA | 10011 | validated | 0.36571 |
| BRCA | TCGA-S3-AA0Z-01A | TCGA-S3-AA0Z | GPRC5B|C16orf96 | GPRC5B | C16orf96 | 16 | 16 | -1 | 1 | 17 | 7 | 7 | 0.56 | 19873159 | 4621562 | tier1 | In-frame | 7383 | NA | 0 |
| READ | TCGA-AF-2687-01A | TCGA-AF-2687 | IGF2|EIF2AK2 | IGF2 | EIF2AK2 | 11 | 2 | -1 | -1 | 2 | 91 | 67 | 0.57 | 2150351 | 37342384 | tier4 | NA | 8099 | NA | 0.38595 |
| COAD | TCGA-G4-6314-01A | TCGA-G4-6314 | IGF2|CCT5 | IGF2 | CCT5 | 11 | 5 | -1 | 1 | 3 | 47 | 23 | 0.06 | 2150351 | 10250033 | tier1 | 3UTR-5UTR | 8095 | NA | 0.37172 |
| LUAD | TCGA-50-5946-01A | TCGA-50-5946 | IGF2|MCM8 | IGF2 | MCM8 | 11 | 20 | -1 | 1 | 2 | 255 | 219 | 2.6 | 2150351 | 5975386 | tier2 | 3UTR-CDS | 8100 | NA | 0.37408 |
|
Showing page 236 |
first page | previous page | next page | last page |
Copyright © 2020 University of Pennsylvania. All Rights Reserved.