Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
| Showing page 235 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| KIRP | TCGA-BQ-5889-01A | TCGA-BQ-5889 | HTRA1|C7 | HTRA1 | C7 | 10 | 5 | 1 | 1 | 2 | 17 | 14 | 1.1 | 124274423 | 40954982 | tier3 | NA | 8031 | NA | 0.35758 |
| LIHC | TCGA-GJ-A6C0-01A | TCGA-GJ-A6C0 | LIPC|CCNA2 | LIPC | CCNA2 | 15 | 4 | 1 | -1 | 10 | 6 | 5 | 3.6 | 58703017 | 122742246 | tier1 | 5UTR-CDS | 9365 | NA | 0.36979 |
| LIHC | TCGA-BD-A3ER-01A | TCGA-BD-A3ER | LIPC|TCF12 | LIPC | TCF12 | 15 | 15 | 1 | 1 | 3 | 2 | 2 | 0.64 | 58724319 | 57458600 | tier1 | In-frame | 9366 | NA | 0.37092 |
| CESC | TCGA-EA-A3HS-01A | TCGA-EA-A3HS | SPINT1|ANXA1 | SPINT1 | ANXA1 | 15 | 9 | 1 | 1 | 2 | 21 | 14 | 2.9 | 41149852 | 75772570 | tier3 | 3UTR-5UTR | 16730 | NA | 0 |
| LGG | TCGA-DB-5277-01A | TCGA-DB-5277 | FBN1|THSD4 | FBN1 | THSD4 | 15 | 15 | -1 | 1 | 5 | 1 | 1 | 0.32 | 48902925 | 71952869 | tier2 | Out-of-frame | 6289 | NA | 0.37281 |
| MESO | TCGA-TS-A8AF-01A | TCGA-TS-A8AF | FBN1|TEX9 | FBN1 | TEX9 | 15 | 15 | -1 | 1 | 6 | 4 | 3 | 2.6 | 48905207 | 56686363 | tier1 | In-frame | 6288 | NA | 0.37411 |
| SARC | TCGA-LI-A9QH-01A | TCGA-LI-A9QH | FBN1|C19orf2 | FBN1 | C19orf2 | 15 | 19 | -1 | 1 | 56 | 67 | 62 | 1.1 | 48936803 | 30476130 | tier1 | In-frame | 6286 | NA | 0 |
| SARC | TCGA-SG-A849-01A | TCGA-SG-A849 | FBN1|EIF3B | FBN1 | EIF3B | 15 | 7 | -1 | 1 | 29 | 16 | 15 | 0.37 | 48757765 | 2415024 | tier1 | Out-of-frame | 6287 | NA | 0.37957 |
| PRAD | TCGA-ZG-A9KY-01A | TCGA-ZG-A9KY | GABRB3|TJP1 | GABRB3 | TJP1 | 15 | 15 | -1 | -1 | 4 | 4 | 4 | 0.48 | 27017549 | 30092905 | tier1 | In-frame | 6902 | NA | 0.37602 |
| STAD | TCGA-VQ-A91K-01A | TCGA-VQ-A91K | SGPL1|ADAMTS14 | SGPL1 | ADAMTS14 | 10 | 10 | 1 | 1 | 2 | 6 | 6 | 1.1 | 72576636 | 72489050 | tier4 | In-frame | 15785 | NA | 0 |
| PRAD | TCGA-VP-A87K-01A | TCGA-VP-A87K | SGPL1|BTBD9 | SGPL1 | BTBD9 | 10 | 6 | 1 | -1 | 4 | 1 | 1 | 0.14 | 72576636 | 38160373 | tier3 | Out-of-frame | 15786 | NA | 0 |
| SARC | TCGA-DX-A1L0-01A | TCGA-DX-A1L0 | ATP9B|ATRX | ATP9B | ATRX | 18 | X | 1 | -1 | 18 | 7 | 7 | 0.49 | 76856649 | 76909690 | tier1 | In-frame | 1779 | validated | 0.37764 |
| SARC | TCGA-DX-A1L0-01A | TCGA-DX-A1L0 | ATP9B|LUC7L | ATP9B | LUC7L | 18 | 16 | 1 | -1 | 28 | 9 | 9 | 1.1 | 76953263 | 258187 | tier1 | In-frame | 1780 | non-validated | 0.35657 |
| PRAD | TCGA-HC-8264-01B | TCGA-HC-8264 | CDYL2|DYNLRB2 | CDYL2 | DYNLRB2 | 16 | 16 | -1 | 1 | 5 | 1 | 1 | 100 | 80838047 | 80577173 | tier3 | In-frame | 3484 | NA | 0.34119 |
| PRAD | TCGA-HC-7744-01A | TCGA-HC-7744 | CDYL2|VEPH1 | CDYL2 | VEPH1 | 16 | 3 | -1 | -1 | 48 | 63 | 55 | 1.2 | 80838047 | 157082301 | tier1 | Out-of-frame | 3485 | validated | 0.36437 |
| LUSC | TCGA-21-1083-01A | TCGA-21-1083 | TMX3|METTL4 | TMX3 | METTL4 | 18 | 18 | -1 | -1 | 75 | 42 | 40 | 0.63 | 66378601 | 2567653 | tier1 | CDS-5UTR | 18325 | non-validated | 0 |
| CESC | TCGA-C5-A7X3-01A | TCGA-C5-A7X3 | WEE1|CHRNA3 | WEE1 | CHRNA3 | 11 | 15 | 1 | -1 | 8 | 8 | 7 | 0.4 | 9608403 | 78894606 | tier1 | In-frame | 19826 | NA | 0 |
| LUAD | TCGA-38-4630-01A | TCGA-38-4630 | TK2|EXOC3L1 | TK2 | EXOC3L1 | 16 | 16 | -1 | -1 | 6 | 4 | 4 | 0.13 | 66570867 | 67223083 | tier1 | Out-of-frame | 17850 | non-validated | 0 |
| LUAD | TCGA-78-7148-01A | TCGA-78-7148 | HSP90B1|SUPT16H | HSP90B1 | SUPT16H | 12 | 14 | 1 | -1 | 2 | 45 | 31 | 0.011 | 104341704 | 21829491 | tier4 | 3UTR-CDS | 7988 | NA | 0.38172 |
| BRCA | TCGA-BH-A0B6-01A | TCGA-BH-A0B6 | HSP90B1|CFB | HSP90B1 | CFB | 12 | 6 | 1 | 1 | 2 | 2 | 1 | 0.39 | 104341704 | 31913427 | tier3 | NA | 7987 | NA | 0.38266 |
|
Showing page 235 |
first page | previous page | next page | last page |
Copyright © 2020 University of Pennsylvania. All Rights Reserved.