TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
LUAD	TCGA-05-4420-01A	TCGA-05-4420	TAF3\|DNAJC1	TAF3	DNAJC1	10	10	1	-1	5	34	29	0.1	7860838	22095028	tier1	Out-of-frame	17329	non-validated	0
PRAD	TCGA-G9-6356-01A	TCGA-G9-6356	TAF3\|ZNF365	TAF3	ZNF365	10	10	1	1	2	1	1	0.72	7866523	64135940	tier3	CDS-5UTR	17332	NA	0
SKCM	TCGA-FW-A3TV-06A	TCGA-FW-A3TV	TAF3\|SVIL	TAF3	SVIL	10	10	1	-1	11	21	21	0.11	7866523	29858241	tier1	CDS-5UTR	17330	NA	0
STAD	TCGA-IN-A6RI-01A	TCGA-IN-A6RI	TAF3\|ATP5C1	TAF3	ATP5C1	10	10	1	1	21	117	104	0.2	7866523	7840953	tier1	In-frame	17328	NA	0
THCA	TCGA-CE-A13K-01A	TCGA-CE-A13K	TAF3\|ZDHHC14	TAF3	ZDHHC14	10	6	1	1	11	5	5	0.37	7866523	157963617	tier1	Out-of-frame	17331	NA	0
ACC	TCGA-OR-A5JP-01A	TCGA-OR-A5JP	QSOX2\|CTU2	QSOX2	CTU2	9	16	-1	1	19	5	4	3.4	139137322	88781268	tier1	Out-of-frame	14016	NA	0
SARC	TCGA-DX-AB3A-01A	TCGA-DX-AB3A	NSD1\|FGF18	NSD1	FGF18	5	5	1	1	13	4	4	0.91	176684152	170876151	tier1	In-frame	11777	NA	0.37785
LIHC	TCGA-2Y-A9H0-01A	TCGA-2Y-A9H0	NSD1\|FGFR4	NSD1	FGFR4	5	5	1	1	3	7	7	0.47	176563031	176519322	tier1	Out-of-frame	11778	NA	0.3867
CESC	TCGA-C5-A7UH-01A	TCGA-C5-A7UH	NSD1\|DPEP2	NSD1	DPEP2	5	16	1	-1	37	22	19	0.29	176619020	68023301	tier1	In-frame	11774	NA	0.37159
ACC	TCGA-OR-A5JS-01A	TCGA-OR-A5JS	NSD1\|EFNA5	NSD1	EFNA5	5	5	1	-1	79	42	39	0.7	176619020	106717077	tier1	In-frame	11775	NA	0.38075
ACC	TCGA-OR-A5JE-01A	TCGA-OR-A5JE	NSD1\|ZNF346	NSD1	ZNF346	5	5	1	1	8	3	2	0.1	176563031	176489059	tier1	Out-of-frame	11788	NA	0.37242
BLCA	TCGA-BT-A20T-01A	TCGA-BT-A20T	NSD1\|FAT2	NSD1	FAT2	5	5	1	-1	2	2	1	0.55	176675325	150892167	tier2	In-frame	11776	non-validated	0.37553
BRCA	TCGA-AN-A0FJ-01A	TCGA-AN-A0FJ	NSD1\|CDH23	NSD1	CDH23	5	10	1	1	35	48	17	0.42	176563031	73434869	tier1	In-frame	11773	NA	0.37712
BRCA	TCGA-A7-A26G-01A	TCGA-A7-A26G	NSD1\|ZNF346	NSD1	ZNF346	5	5	1	1	32	27	26	0.1	176563031	176468127	tier1	Out-of-frame	11784	non-validated	0.37242
BRCA	TCGA-D8-A140-01A	TCGA-D8-A140	NSD1\|ZNF346	NSD1	ZNF346	5	5	1	1	40	37	33	0.1	176619020	176489059	tier1	In-frame	11786	NA	0.37242
CESC	TCGA-C5-A3HF-01A	TCGA-C5-A3HF	NSD1\|ZNF346	NSD1	ZNF346	5	5	1	1	4	1	1	0.1	176619020	176468127	tier3	In-frame	11785	NA	0.37242
LAML	TCGA-AB-2856-03A	TCGA-AB-2856	NSD1\|NUP98	NSD1	NUP98	5	11	1	-1	25	10	8	0.92	176639196	3756554	tier1	In-frame	11779	NA	0.37534
LAML	TCGA-AB-2930-03A	TCGA-AB-2930	NSD1\|NUP98	NSD1	NUP98	5	11	1	-1	21	43	38	0.92	176639196	3756554	tier1	In-frame	11780	NA	0.37534
LGG	TCGA-RY-A83Z-01A	TCGA-RY-A83Z	NSD1\|RNF130	NSD1	RNF130	5	5	1	-1	3	1	1	1.2	176563031	179467647	tier2	Out-of-frame	11781	NA	0.37644
LUAD	TCGA-49-4505-01A	TCGA-49-4505	NSD1\|UNC5A	NSD1	UNC5A	5	5	1	1	2	2	1	0.5	176563031	176289625	tier3	Out-of-frame	11782	NA	0.38107

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