Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SKCM | TCGA-ER-A197-06A | TCGA-ER-A197 | GRIK2|MANEA | GRIK2 | MANEA | 6 | 6 | 1 | 1 | 2 | 1 | 1 | 2.8 | 102134228 | 96034278 | tier3 | CDS-5UTR | 7450 | NA | 0.35778 |
| SKCM | TCGA-D3-A1Q3-06A | TCGA-D3-A1Q3 | HCN1|SPEF2 | HCN1 | SPEF2 | 5 | 5 | -1 | 1 | 3 | 2 | 2 | 0.33 | 45645287 | 35667174 | tier1 | In-frame | 7608 | NA | 0.35046 |
| KIRP | TCGA-B9-A69E-01A | TCGA-B9-A69E | KCNK5|RUNX2 | KCNK5 | RUNX2 | 6 | 6 | -1 | 1 | 2 | 2 | 2 | 0.018 | 39161945 | 45479983 | tier2 | In-frame | 8581 | NA | 0.37462 |
| LUAD | TCGA-91-A4BC-01A | TCGA-91-A4BC | KCNK5|PDE4DIP | KCNK5 | PDE4DIP | 6 | 1 | -1 | -1 | 8 | 7 | 7 | 1.2 | 39196702 | 144994701 | tier1 | In-frame | 8580 | NA | 0.3559 |
| LUSC | TCGA-60-2720-01A | TCGA-60-2720 | KCNK5|KIF6 | KCNK5 | KIF6 | 6 | 6 | -1 | -1 | 15 | 16 | 13 | 1.2 | 39196702 | 39398937 | tier1 | Out-of-frame | 8579 | NA | 0.35365 |
| LUSC | TCGA-77-A5G3-01A | TCGA-77-A5G3 | SHH|PLCB1 | SHH | PLCB1 | 7 | 20 | -1 | 1 | 2 | 4 | 3 | 0.095 | 155604517 | 8696911 | tier2 | Out-of-frame | 15887 | NA | 0 |
| BRCA | TCGA-AC-A2QH-01B | TCGA-AC-A2QH | COL1A2|WNT2 | COL1A2 | WNT2 | 7 | 7 | 1 | -1 | 2 | 1 | 1 | 0.56 | 94055842 | 116937930 | tier2 | In-frame | 4003 | NA | 0.3642 |
| LUSC | TCGA-63-A5MG-01A | TCGA-63-A5MG | LMTK2|IMMP2L | LMTK2 | IMMP2L | 7 | 7 | 1 | -1 | 4 | 16 | 11 | 0.48 | 97800986 | 110603621 | tier1 | In-frame | 9408 | NA | 0.3674 |
| LUSC | TCGA-92-8063-01A | TCGA-92-8063 | LMTK2|PCLO | LMTK2 | PCLO | 7 | 7 | 1 | -1 | 9 | 5 | 4 | 0.53 | 97780767 | 82785708 | tier1 | Out-of-frame | 9409 | NA | 0.37267 |
| THCA | TCGA-EM-A3FK-01A | TCGA-EM-A3FK | CTSB|PLAT | CTSB | PLAT | 8 | 8 | -1 | -1 | 2 | 33 | 4 | 0.37 | 11701829 | 42051245 | tier3 | NA | 4400 | NA | 0.37773 |
| KIRP | TCGA-BQ-5884-01A | TCGA-BQ-5884 | CTSB|FOXP1 | CTSB | FOXP1 | 8 | 3 | -1 | -1 | 2 | 14 | 6 | 0.28 | 11701829 | 71007472 | tier4 | NA | 4399 | NA | 0.36958 |
| LUAD | TCGA-71-6725-01A | TCGA-71-6725 | CTSB|ARFGEF2 | CTSB | ARFGEF2 | 8 | 20 | -1 | 1 | 2 | 70 | 10 | 1.2 | 11701829 | 47615777 | tier4 | 3UTR-CDS | 4393 | NA | 0.36922 |
| LUAD | TCGA-86-6851-01A | TCGA-86-6851 | CTSB|FAR1 | CTSB | FAR1 | 8 | 11 | -1 | 1 | 2 | 54 | 3 | 0.8 | 11701829 | 13744912 | tier4 | NA | 4398 | NA | 0.36778 |
| THCA | TCGA-DJ-A2PZ-01A | TCGA-DJ-A2PZ | CTSB|CBS | CTSB | CBS | 8 | 21 | -1 | -1 | 2 | 30 | 1 | 1.2 | 11701829 | 44476011 | tier4 | NA | 4394 | NA | 0.36683 |
| THCA | TCGA-DJ-A3V6-01A | TCGA-DJ-A3V6 | CTSB|EIF4A2 | CTSB | EIF4A2 | 8 | 3 | -1 | 1 | 3 | 1 | 1 | 3.2 | 11701564 | 186501336 | tier3 | 3UTR-5UTR | 4395 | NA | 0.3723 |
| THCA | TCGA-DJ-A3VM-01A | TCGA-DJ-A3VM | CTSB|EIF4A2 | CTSB | EIF4A2 | 8 | 3 | -1 | 1 | 2 | 1 | 1 | 3.2 | 11701564 | 186501336 | tier3 | 3UTR-5UTR | 4396 | NA | 0.3723 |
| THCA | TCGA-ET-A40Q-01A | TCGA-ET-A40Q | CTSB|EIF4A2 | CTSB | EIF4A2 | 8 | 3 | -1 | 1 | 2 | 1 | 1 | 3.2 | 11701564 | 186501336 | tier3 | 3UTR-5UTR | 4397 | NA | 0.3723 |
| THCA | TCGA-4C-A93U-01A | TCGA-4C-A93U | CTSB|TMEM173 | CTSB | TMEM173 | 8 | 5 | -1 | -1 | 2 | 30 | 1 | 0.24 | 11701564 | 138862375 | tier3 | 3UTR-5UTR | 4401 | NA | 0.36382 |
| BRCA | TCGA-AR-A0TW-01A | TCGA-AR-A0TW | ADCY1|EYA4 | ADCY1 | EYA4 | 7 | 6 | 1 | 1 | 18 | 6 | 6 | 0.21 | 45614781 | 133595854 | tier1 | CDS-5UTR | 469 | NA | 0.35549 |
| LUSC | TCGA-46-3769-01A | TCGA-46-3769 | GPR146|DTNBP1 | GPR146 | DTNBP1 | 7 | 6 | 1 | -1 | 2 | 6 | 6 | 0.47 | 1084294 | 15533626 | tier2 | NA | 7364 | NA | 0.35661 |
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