Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BLCA | TCGA-K4-A3WU-01B | TCGA-K4-A3WU | HPGD|GUCY1A3 | HPGD | GUCY1A3 | 4 | 4 | -1 | 1 | 31 | 18 | 16 | 0.039 | 175443095 | 156629388 | tier1 | Out-of-frame | 7949 | NA | 0.34857 |
| CESC | TCGA-VS-A8EI-01A | TCGA-VS-A8EI | ITGA2|PARP8 | ITGA2 | PARP8 | 5 | 5 | 1 | 1 | 2 | 3 | 3 | 0.58 | 52285362 | 50055477 | tier2 | In-frame | 8375 | NA | 0.36597 |
| KIRP | TCGA-P4-A5EB-01A | TCGA-P4-A5EB | ITGA2|MYO18B | ITGA2 | MYO18B | 5 | 22 | 1 | 1 | 8 | 6 | 6 | 0.69 | 52353931 | 26388329 | tier1 | In-frame | 8374 | NA | 0.36972 |
| KIRP | TCGA-B9-A5W9-01A | TCGA-B9-A5W9 | ITGA2|RNF180 | ITGA2 | RNF180 | 5 | 5 | 1 | 1 | 17 | 5 | 3 | 1.4 | 52285362 | 63621013 | tier2 | Out-of-frame | 8376 | NA | 0.36729 |
| LUSC | TCGA-63-A5M9-01A | TCGA-63-A5M9 | ITGA2|CEACAM21 | ITGA2 | CEACAM21 | 5 | 19 | 1 | 1 | 24 | 19 | 19 | 1.6 | 52379283 | 42083552 | tier2 | CDS-5UTR | 8373 | NA | 0.36836 |
| BLCA | TCGA-BL-A0C8-01B | TCGA-BL-A0C8 | SLC45A2|AMACR | SLC45A2 | AMACR | 5 | 5 | -1 | -1 | 2 | 2 | 1 | 0.12 | 33982341 | 34006004 | tier2 | In-frame | 16234 | non-validated | 0 |
| ESCA | TCGA-L5-A4OQ-01A | TCGA-L5-A4OQ | SLC45A2|C1QTNF3 | SLC45A2 | C1QTNF3 | 5 | 5 | -1 | -1 | 2 | 4 | 4 | 4 | 33982341 | 34035863 | tier3 | Out-of-frame | 16235 | NA | 0 |
| PRAD | TCGA-ZG-A9L4-01A | TCGA-ZG-A9L4 | SLC45A2|CCDC125 | SLC45A2 | CCDC125 | 5 | 5 | -1 | -1 | 10 | 10 | 10 | 0.41 | 33982341 | 68581294 | tier1 | In-frame | 16236 | NA | 0 |
| MESO | TCGA-TS-A8AF-01A | TCGA-TS-A8AF | EDIL3|MAN1C1 | EDIL3 | MAN1C1 | 5 | 1 | -1 | 1 | 3 | 1 | 1 | 0.22 | 83680126 | 26098148 | tier2 | In-frame | 5278 | NA | 0.36001 |
| BRCA | TCGA-AO-A0JA-01A | TCGA-AO-A0JA | GPR98|ATR | GPR98 | ATR | 5 | 3 | 1 | -1 | 2 | 5 | 5 | 0.47 | 89924649 | 142286996 | tier2 | Out-of-frame | 7379 | NA | 0.37469 |
| ACC | TCGA-OR-A5JV-01A | TCGA-OR-A5JV | GPR98|CLPTM1L | GPR98 | CLPTM1L | 5 | 5 | 1 | -1 | 193 | 104 | 92 | 0.041 | 90281339 | 1318568 | tier1 | In-frame | 7380 | NA | 0.34918 |
| BRCA | TCGA-B6-A0I8-01A | TCGA-B6-A0I8 | GPR98|POLR3G | GPR98 | POLR3G | 5 | 5 | 1 | 1 | 4 | 2 | 2 | 0.19 | 89938858 | 89797723 | tier4 | Out-of-frame | 7381 | NA | 0.34579 |
| BRCA | TCGA-AR-A256-01A | TCGA-AR-A256 | PGGT1B|KIAA0825 | PGGT1B | KIAA0825 | 5 | 5 | -1 | -1 | 9 | 7 | 7 | 0.041 | 114588834 | 93489829 | tier1 | Out-of-frame | 12663 | non-validated | 0.34517 |
| LUAD | TCGA-93-8067-01A | TCGA-93-8067 | GPX8|TTLL1 | GPX8 | TTLL1 | 5 | 22 | 1 | -1 | 4 | 3 | 2 | 0.68 | 54456071 | 43455533 | tier1 | In-frame | 7397 | NA | 0.33752 |
| SARC | TCGA-DX-A8BU-01A | TCGA-DX-A8BU | SLC35A1|LRRFIP1 | SLC35A1 | LRRFIP1 | 6 | 2 | 1 | 1 | 2 | 3 | 3 | 3.5 | 88211028 | 238617187 | tier2 | In-frame | 16153 | NA | 0 |
| SKCM | TCGA-D3-A2JP-06A | TCGA-D3-A2JP | GRIK2|GPC1 | GRIK2 | GPC1 | 6 | 2 | 1 | 1 | 4 | 6 | 6 | 2.3 | 101847268 | 241398447 | tier1 | In-frame | 7449 | NA | 0.36884 |
| LGG | TCGA-TM-A7CF-01A | TCGA-TM-A7CF | GRIK2|EYS | GRIK2 | EYS | 6 | 6 | 1 | -1 | 2 | 2 | 2 | 0.53 | 101847268 | 65767620 | tier3 | In-frame | 7448 | validated | 0.36493 |
| BRCA | TCGA-OL-A5DA-01A | TCGA-OL-A5DA | GRIK2|CDKAL1 | GRIK2 | CDKAL1 | 6 | 6 | 1 | 1 | 5 | 6 | 6 | 0.57 | 101847268 | 21065279 | tier1 | Out-of-frame | 7447 | NA | 0.36309 |
| SARC | TCGA-HB-A3YV-01A | TCGA-HB-A3YV | GRIK2|RNF217 | GRIK2 | RNF217 | 6 | 6 | 1 | 1 | 36 | 58 | 49 | 0.16 | 102376507 | 125366357 | tier1 | In-frame | 7451 | NA | 0.36274 |
| SARC | TCGA-HB-A3YV-01A | TCGA-HB-A3YV | GRIK2|WASF1 | GRIK2 | WASF1 | 6 | 6 | 1 | -1 | 8 | 11 | 10 | 2 | 102134228 | 110448832 | tier1 | CDS-5UTR | 7452 | NA | 0.36985 |
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