Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| MESO | TCGA-ZN-A9VU-01A | TCGA-ZN-A9VU | SFMBT1|ZDHHC3 | SFMBT1 | ZDHHC3 | 3 | 3 | -1 | -1 | 20 | 12 | 11 | 1.8 | 53079832 | 45000952 | tier1 | 5UTR-5UTR | 15745 | NA | 0 |
| UCEC | TCGA-A5-A7WK-01A | TCGA-A5-A7WK | SFMBT1|EML1 | SFMBT1 | EML1 | 3 | 14 | -1 | 1 | 9 | 10 | 9 | 0.72 | 52988333 | 100357536 | tier1 | Out-of-frame | 15738 | NA | 0 |
| SKCM | TCGA-EB-A5SE-01A | TCGA-EB-A5SE | PBRM1|NEK4 | PBRM1 | NEK4 | 3 | 3 | -1 | -1 | 14 | 8 | 7 | 1 | 52637537 | 52773650 | tier1 | Out-of-frame | 12337 | NA | 0.36308 |
| LGG | TCGA-HT-7477-01B | TCGA-HT-7477 | PBRM1|KYNU | PBRM1 | KYNU | 3 | 2 | -1 | 1 | 67 | 48 | 42 | 1.7 | 52692215 | 143742653 | tier2 | In-frame | 12336 | NA | 0.35749 |
| LUAD | TCGA-99-8032-01A | TCGA-99-8032 | PBRM1|IGSF11 | PBRM1 | IGSF11 | 3 | 3 | -1 | -1 | 7 | 4 | 3 | 0.078 | 52712516 | 118647563 | tier1 | Out-of-frame | 12335 | NA | 0.3616 |
| BRCA | TCGA-E2-A1L7-01A | TCGA-E2-A1L7 | PBRM1|CACNA2D3 | PBRM1 | CACNA2D3 | 3 | 3 | -1 | 1 | 2 | 7 | 6 | 0.99 | 52637537 | 54420742 | tier2 | Out-of-frame | 12332 | NA | 0.35421 |
| BRCA | TCGA-A7-A26G-01A | TCGA-A7-A26G | PBRM1|TKT | PBRM1 | TKT | 3 | 3 | -1 | -1 | 5 | 9 | 7 | 0.23 | 52692215 | 53276258 | tier1 | Out-of-frame | 12338 | non-validated | 0.35391 |
| HNSC | TCGA-QK-A6VC-01A | TCGA-QK-A6VC | PBRM1|GLT8D1 | PBRM1 | GLT8D1 | 3 | 3 | -1 | -1 | 10 | 17 | 14 | 0.62 | 52712516 | 52734512 | tier1 | CDS-5UTR | 12334 | NA | 0.3519 |
| LUAD | TCGA-55-8085-01A | TCGA-55-8085 | PBRM1|TMEM110-MUSTN1 | PBRM1 | TMEM110-MUSTN1 | 3 | 3 | -1 | -1 | 12 | 4 | 4 | 4.6 | 52584437 | 52889460 | tier1 | In-frame | 12339 | NA | 0.35034 |
| MESO | TCGA-MQ-A4LM-01A | TCGA-MQ-A4LM | PBRM1|FBXW12 | PBRM1 | FBXW12 | 3 | 3 | -1 | 1 | 3 | 4 | 4 | 0.44 | 52595783 | 48416844 | tier1 | In-frame | 12333 | NA | 0.35578 |
| BLCA | TCGA-DK-A3X2-01A | TCGA-DK-A3X2 | MFI2|IGSF11 | MFI2 | IGSF11 | 3 | 3 | -1 | -1 | 3 | 2 | 1 | 0.5 | 196730772 | 118624565 | tier3 | In-frame | 10286 | NA | 0.34916 |
| LGG | TCGA-E1-5304-01A | TCGA-E1-5304 | SLC9B1|LRRK1 | SLC9B1 | LRRK1 | 4 | 15 | -1 | 1 | 4 | 1 | 1 | 1.8 | 103912800 | 101586186 | tier2 | Out-of-frame | 16307 | NA | 0 |
| OV | TCGA-36-1575-01A | TCGA-36-1575 | CDC25A|PRKAR2A | CDC25A | PRKAR2A | 3 | 3 | -1 | -1 | 2 | 8 | 8 | 0.072 | 48215774 | 48820525 | tier2 | In-frame | 3320 | NA | 0.38472 |
| UCEC | TCGA-D1-A3JQ-01A | TCGA-D1-A3JQ | CDC25A|SLC26A6 | CDC25A | SLC26A6 | 3 | 3 | -1 | -1 | 16 | 14 | 11 | 1.3 | 48229268 | 48667144 | tier1 | In-frame | 3322 | NA | 0.38404 |
| LUSC | TCGA-66-2756-01A | TCGA-66-2756 | CDC25A|SPINK8 | CDC25A | SPINK8 | 3 | 3 | -1 | -1 | 39 | 13 | 10 | 0.2 | 48205797 | 48351436 | tier1 | In-frame | 3323 | validated | 0.37526 |
| SKCM | TCGA-D3-A2JG-06A | TCGA-D3-A2JG | CDC25A|RBM6 | CDC25A | RBM6 | 3 | 3 | -1 | 1 | 10 | 2 | 2 | 1.9 | 48224419 | 50085678 | tier1 | In-frame | 3321 | NA | 0.37611 |
| MESO | TCGA-UD-AABY-01A | TCGA-UD-AABY | PLXNB1|ITIH3 | PLXNB1 | ITIH3 | 3 | 3 | -1 | 1 | 13 | 8 | 7 | 0.005 | 48463083 | 52838742 | tier1 | Out-of-frame | 13069 | NA | 0.37503 |
| LIHC | TCGA-DD-A1EB-01A | TCGA-DD-A1EB | PLXNB1|SLC26A6 | PLXNB1 | SLC26A6 | 3 | 3 | -1 | -1 | 10 | 8 | 8 | 0.058 | 48460986 | 48667144 | tier1 | Out-of-frame | 13070 | validated | 0.38138 |
| LUAD | TCGA-95-7039-01A | TCGA-95-7039 | MST1R|FNDC3B | MST1R | FNDC3B | 3 | 3 | -1 | 1 | 47 | 25 | 21 | 4.5 | 49932600 | 171904502 | tier1 | In-frame | 10758 | NA | 0.38691 |
| BRCA | TCGA-D8-A140-01A | TCGA-D8-A140 | DUSP7|PBRM1 | DUSP7 | PBRM1 | 3 | 3 | -1 | -1 | 8 | 1 | 1 | 0.021 | 52087956 | 52588895 | tier3 | In-frame | 5186 | NA | 0.37005 |
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