Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SKCM | TCGA-FR-A44A-06A | TCGA-FR-A44A | IL17RC|TTLL3 | IL17RC | TTLL3 | 3 | 3 | 1 | 1 | 3 | 5 | 5 | 0.13 | 9970314 | 9857758 | tier1 | CDS-5UTR | 8164 | NA | 0.34051 |
| PRAD | TCGA-KK-A6E1-01A | TCGA-KK-A6E1 | RYK|KALRN | RYK | KALRN | 3 | 3 | -1 | 1 | 102 | 79 | 70 | 1.1 | 133907681 | 124149503 | tier1 | Out-of-frame | 15215 | NA | 0 |
| BRCA | TCGA-BH-A0DL-01A | TCGA-BH-A0DL | RYK|RABL3 | RYK | RABL3 | 3 | 3 | -1 | -1 | 20 | 22 | 20 | 0.4 | 133921574 | 120417420 | tier1 | In-frame | 15216 | NA | 0 |
| SKCM | TCGA-Z2-AA3S-06A | TCGA-Z2-AA3S | SNRK|SUCLG2 | SNRK | SUCLG2 | 3 | 3 | 1 | -1 | 193 | 88 | 80 | 0.12 | 43328167 | 67451275 | tier1 | 5UTR-CDS | 16496 | NA | 0 |
| PRAD | TCGA-CH-5789-01A | TCGA-CH-5789 | RPN1|ALDOA | RPN1 | ALDOA | 3 | 16 | -1 | 1 | 2 | 7 | 4 | 0.7 | 128338817 | 30075973 | tier3 | 3UTR-5UTR | 15012 | NA | 0 |
| KIRP | TCGA-G7-6793-01A | TCGA-G7-6793 | RPN1|MAP6D1 | RPN1 | MAP6D1 | 3 | 3 | -1 | -1 | 52 | 27 | 26 | 2.1 | 128363762 | 183535899 | tier1 | In-frame | 15013 | NA | 0 |
| LGG | TCGA-HT-7854-01A | TCGA-HT-7854 | RPN1|UTRN | RPN1 | UTRN | 3 | 6 | -1 | 1 | 2 | 1 | 1 | 1 | 128338817 | 144665237 | tier3 | NA | 15014 | NA | 0 |
| SKCM | TCGA-ER-A3ES-06A | TCGA-ER-A3ES | BAP1|PBRM1 | BAP1 | PBRM1 | 3 | 3 | -1 | -1 | 5 | 2 | 2 | 0.3 | 52438469 | 52663051 | tier1 | In-frame | 1924 | validated | 0.35748 |
| MESO | TCGA-UD-AABY-01A | TCGA-UD-AABY | BAP1|PLXNB1 | BAP1 | PLXNB1 | 3 | 3 | -1 | -1 | 7 | 2 | 2 | 1 | 52437154 | 48455480 | tier1 | In-frame | 1925 | NA | 0.3779 |
| LGG | TCGA-TQ-A7RW-01A | TCGA-TQ-A7RW | BAP1|DNAH1 | BAP1 | DNAH1 | 3 | 3 | -1 | 1 | 32 | 28 | 26 | 0.004 | 52439781 | 52378506 | tier1 | Out-of-frame | 1922 | NA | 0.34996 |
| LIHC | TCGA-ED-A82E-01A | TCGA-ED-A82E | BAP1|KB-1507C5.2 | BAP1 | KB-1507C5.2 | 3 | 8 | -1 | 1 | 35 | 19 | 18 | 0.089 | 52441974 | 103892123 | tier1 | CDS-3UTR | 1923 | NA | 0.34592 |
| MESO | TCGA-SH-A7BD-01A | TCGA-SH-A7BD | BAP1|RILP | BAP1 | RILP | 3 | 17 | -1 | -1 | 128 | 160 | 139 | 0.24 | 52443570 | 1551789 | tier1 | Out-of-frame | 1926 | NA | 0.34938 |
| MESO | TCGA-MQ-A4LC-01A | TCGA-MQ-A4LC | BAP1|TCEA3 | BAP1 | TCEA3 | 3 | 1 | -1 | -1 | 43 | 18 | 17 | 0.062 | 52440269 | 23745632 | tier1 | In-frame | 1927 | NA | 0.34778 |
| SKCM | TCGA-ER-A19M-06A | TCGA-ER-A19M | SFMBT1|PTPRG | SFMBT1 | PTPRG | 3 | 3 | -1 | 1 | 6 | 6 | 6 | 1.4 | 53079832 | 61975299 | tier1 | 5UTR-CDS | 15739 | NA | 0 |
| LUAD | TCGA-38-4630-01A | TCGA-38-4630 | SFMBT1|WNT7A | SFMBT1 | WNT7A | 3 | 3 | -1 | -1 | 36 | 19 | 19 | 0.015 | 53003117 | 13916670 | tier1 | Out-of-frame | 15744 | non-validated | 0 |
| STAD | TCGA-R5-A7ZE-01B | TCGA-R5-A7ZE | SFMBT1|TKT | SFMBT1 | TKT | 3 | 3 | -1 | -1 | 7 | 36 | 31 | 0.011 | 53079832 | 53276258 | tier1 | 5UTR-CDS | 15743 | NA | 0 |
| BRCA | TCGA-A2-A4S3-01A | TCGA-A2-A4S3 | SFMBT1|RFT1 | SFMBT1 | RFT1 | 3 | 3 | -1 | -1 | 4 | 1 | 1 | 0.81 | 53077152 | 53160010 | tier3 | 5UTR-CDS | 15740 | NA | 0 |
| BRCA | TCGA-A8-A07L-01A | TCGA-A8-A07L | SFMBT1|RFT1 | SFMBT1 | RFT1 | 3 | 3 | -1 | -1 | 45 | 25 | 25 | 0.81 | 53080476 | 53140885 | tier1 | NA | 15741 | NA | 0 |
| KIRC | TCGA-CZ-4861-01A | TCGA-CZ-4861 | SFMBT1|ABHD5 | SFMBT1 | ABHD5 | 3 | 3 | -1 | 1 | 21 | 14 | 14 | 0.93 | 53052102 | 43743707 | tier1 | NA | 15737 | NA | 0 |
| LIHC | TCGA-XR-A8TG-01A | TCGA-XR-A8TG | SFMBT1|RFT1 | SFMBT1 | RFT1 | 3 | 3 | -1 | -1 | 8 | 19 | 18 | 0.81 | 52977369 | 53133502 | tier1 | In-frame | 15742 | NA | 0 |
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