Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-G9-6339-01A | TCGA-G9-6339 | RYBP|CNTN4 | RYBP | CNTN4 | 3 | 3 | -1 | 1 | 9 | 3 | 3 | 0.25 | 72495647 | 2777899 | tier1 | NA | 15211 | NA | 0 |
| BRCA | TCGA-C8-A12L-01A | TCGA-C8-A12L | RYBP|TADA3 | RYBP | TADA3 | 3 | 3 | -1 | -1 | 53 | 39 | 35 | 100 | 72495647 | 9833177 | tier1 | NA | 15214 | non-validated | 0 |
| PRAD | TCGA-KK-A8IJ-01A | TCGA-KK-A8IJ | RYBP|FHIT | RYBP | FHIT | 3 | 3 | -1 | -1 | 3 | 3 | 3 | 0.023 | 72495647 | 59738047 | tier1 | NA | 15213 | NA | 0 |
| THYM | TCGA-4V-A9QJ-01A | TCGA-4V-A9QJ | RYBP|FHIT | RYBP | FHIT | 3 | 3 | -1 | -1 | 754 | 608 | 534 | 0.023 | 72495647 | 59738047 | tier1 | NA | 15212 | NA | 0 |
| UCS | TCGA-NA-A4QV-01A | TCGA-NA-A4QV | PTPN13|MAPK10 | PTPN13 | MAPK10 | 4 | 4 | 1 | -1 | 2 | 2 | 2 | 0.1 | 87515942 | 87115560 | tier2 | 5UTR-5UTR | 13823 | NA | 0.38905 |
| CESC | TCGA-VS-A8QC-01A | TCGA-VS-A8QC | PTPN13|C4orf36 | PTPN13 | C4orf36 | 4 | 4 | 1 | -1 | 63 | 190 | 164 | 0.2 | 87656899 | 87797596 | tier1 | CDS-3UTR | 13822 | NA | 0 |
| LIHC | TCGA-G3-A7M6-01A | TCGA-G3-A7M6 | ALB|TLN1 | ALB | TLN1 | 4 | 9 | 1 | -1 | 3 | 1 | 1 | 0.058 | 74286973 | 35720506 | tier3 | 3UTR-CDS | 791 | NA | 0.37955 |
| KIRP | TCGA-SX-A7SS-01A | TCGA-SX-A7SS | ALB|EXOSC9 | ALB | EXOSC9 | 4 | 4 | 1 | 1 | 4 | 2 | 2 | 0.43 | 74270123 | 122737927 | tier1 | Out-of-frame | 785 | NA | 0.36556 |
| LIHC | TCGA-5R-AAAM-01A | TCGA-5R-AAAM | ALB|AC008537.4 | ALB | AC008537.4 | 4 | 19 | 1 | 1 | 1493 | 4581 | 4374 | 1.4 | 74282070 | 41454958 | tier1 | CDS-3UTR | 782 | NA | 0.35787 |
| LIHC | TCGA-XR-A8TD-01A | TCGA-XR-A8TD | ALB|ARFGEF2 | ALB | ARFGEF2 | 4 | 20 | 1 | 1 | 2 | 702 | 666 | 0.2 | 74286971 | 47615777 | tier3 | 3UTR-CDS | 783 | NA | 0.36706 |
| LIHC | TCGA-DD-AADD-01A | TCGA-DD-AADD | ALB|DDX21 | ALB | DDX21 | 4 | 10 | 1 | 1 | 2 | 122 | 120 | 1.3 | 74286971 | 70723858 | tier4 | NA | 784 | NA | 0.37052 |
| LIHC | TCGA-XR-A8TG-01A | TCGA-XR-A8TG | ALB|EXOSC9 | ALB | EXOSC9 | 4 | 4 | 1 | 1 | 1402 | 2012 | 1930 | 0.43 | 74270123 | 122737927 | tier1 | Out-of-frame | 786 | NA | 0.36556 |
| LIHC | TCGA-BC-4072-01B | TCGA-BC-4072 | ALB|FOXP1 | ALB | FOXP1 | 4 | 3 | 1 | -1 | 2 | 52 | 2 | 0.16 | 74286971 | 71007472 | tier3 | NA | 787 | NA | 0.3676 |
| LIHC | TCGA-ED-A459-01A | TCGA-ED-A459 | ALB|PLEKHA5 | ALB | PLEKHA5 | 4 | 12 | 1 | 1 | 2 | 274 | 261 | 0.52 | 74286971 | 19441012 | tier2 | NA | 788 | non-validated | 0.36425 |
| LIHC | TCGA-DD-A3A8-01A | TCGA-DD-A3A8 | ALB|SEC63 | ALB | SEC63 | 4 | 6 | 1 | -1 | 2 | 6 | 1 | 1.8 | 74286971 | 108214782 | tier3 | NA | 789 | non-validated | 0.36437 |
| LIHC | TCGA-DD-A3A7-01A | TCGA-DD-A3A7 | ALB|SQSTM1 | ALB | SQSTM1 | 4 | 5 | 1 | 1 | 3 | 7 | 1 | 0.24 | 74286971 | 179250858 | tier3 | 3UTR-CDS | 790 | non-validated | 0.38043 |
| LIHC | TCGA-G3-A25X-01A | TCGA-G3-A25X | ALB|UBAC1 | ALB | UBAC1 | 4 | 9 | 1 | -1 | 2 | 3 | 2 | 1.8 | 74286971 | 138839751 | tier3 | 3UTR-CDS | 792 | NA | 0.36462 |
| LUAD | TCGA-62-8395-01A | TCGA-62-8395 | ADAMTS9|CHL1 | ADAMTS9 | CHL1 | 3 | 3 | -1 | 1 | 2 | 2 | 1 | 0.014 | 64619374 | 447178 | tier3 | Out-of-frame | 444 | NA | 0.35713 |
| LUAD | TCGA-38-4630-01A | TCGA-38-4630 | ADAMTS9|ULK4 | ADAMTS9 | ULK4 | 3 | 3 | -1 | -1 | 29 | 12 | 11 | 0.35 | 64635313 | 41877463 | tier1 | In-frame | 446 | validated | 0.36337 |
| PRAD | TCGA-J4-A83J-01A | TCGA-J4-A83J | ADAMTS9|SYNPR | ADAMTS9 | SYNPR | 3 | 3 | -1 | 1 | 8 | 7 | 4 | 0.72 | 64579934 | 63542219 | tier2 | Out-of-frame | 445 | NA | 0.35504 |
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