Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| ACC | TCGA-OR-A5JC-01A | TCGA-OR-A5JC | FAM19A4|LMOD3 | FAM19A4 | LMOD3 | 3 | 3 | -1 | -1 | 6 | 8 | 6 | 1.2 | 68929881 | 69171560 | tier1 | CDS-5UTR | 6152 | NA | 0.34075 |
| ACC | TCGA-OR-A5LB-01A | TCGA-OR-A5LB | FAM19A4|TMF1 | FAM19A4 | TMF1 | 3 | 3 | -1 | -1 | 33 | 35 | 33 | 0.046 | 68929881 | 69097713 | tier1 | In-frame | 6153 | NA | 0.36452 |
| SKCM | TCGA-ER-A19E-06A | TCGA-ER-A19E | FAM19A4|UBA3 | FAM19A4 | UBA3 | 3 | 3 | -1 | -1 | 2 | 3 | 3 | 0.05 | 68929881 | 69105434 | tier2 | Out-of-frame | 6154 | validated | 0.36082 |
| BRCA | TCGA-A8-A0A6-01A | TCGA-A8-A0A6 | SLC22A15|ANO1 | SLC22A15 | ANO1 | 1 | 11 | 1 | 1 | 7 | 20 | 20 | 0.81 | 116580009 | 69995816 | tier1 | In-frame | 16063 | NA | 0 |
| PRAD | TCGA-HC-7737-01A | TCGA-HC-7737 | ATP1A1|FN1 | ATP1A1 | FN1 | 1 | 2 | 1 | -1 | 2 | 13 | 12 | 1.2 | 116947396 | 216274837 | tier4 | 3UTR-CDS | 1691 | non-validated | 0.37966 |
| BRCA | TCGA-A2-A0ST-01A | TCGA-A2-A0ST | ATP1A1|NOTCH2 | ATP1A1 | NOTCH2 | 1 | 1 | 1 | -1 | 19 | 12 | 9 | 5.3 | 116926746 | 120465401 | tier1 | Out-of-frame | 1693 | NA | 0.39004 |
| BRCA | TCGA-AR-A1AM-01A | TCGA-AR-A1AM | ATP1A1|RABEP1 | ATP1A1 | RABEP1 | 1 | 17 | 1 | 1 | 2 | 11 | 11 | 0.72 | 116947394 | 5283828 | tier4 | NA | 1694 | NA | 0.37007 |
| BRCA | TCGA-E2-A15A-01A | TCGA-E2-A15A | ATP1A1|VANGL1 | ATP1A1 | VANGL1 | 1 | 1 | 1 | 1 | 10 | 10 | 9 | 4.1 | 116916145 | 116206282 | tier1 | In-frame | 1695 | NA | 0.36493 |
| COAD | TCGA-CK-4952-01A | TCGA-CK-4952 | ATP1A1|DDX21 | ATP1A1 | DDX21 | 1 | 10 | 1 | 1 | 2 | 8 | 8 | 2.2 | 116947394 | 70723858 | tier4 | NA | 1690 | NA | 0.37023 |
| STAD | TCGA-BR-8682-01A | TCGA-BR-8682 | ATP1A1|DDX21 | ATP1A1 | DDX21 | 1 | 10 | 1 | 1 | 2 | 17 | 10 | 2.2 | 116947394 | 70723858 | tier3 | NA | 1689 | non-validated | 0.37023 |
| STAD | TCGA-BR-8289-01A | TCGA-BR-8289 | ATP1A1|IGSF3 | ATP1A1 | IGSF3 | 1 | 1 | 1 | -1 | 8 | 63 | 53 | 0.08 | 116946597 | 117122499 | tier4 | In-frame | 1692 | NA | 0.37204 |
| SARC | TCGA-PC-A5DM-01A | TCGA-PC-A5DM | FSTL1|CPOX | FSTL1 | CPOX | 3 | 3 | -1 | -1 | 15 | 10 | 8 | 0.049 | 120128379 | 98304503 | tier1 | Out-of-frame | 6811 | NA | 0.34483 |
| STAD | TCGA-BR-8687-01A | TCGA-BR-8687 | SSR2|SUPT16H | SSR2 | SUPT16H | 1 | 14 | -1 | -1 | 2 | 4 | 2 | 0.18 | 155978839 | 21829491 | tier3 | 3UTR-CDS | 16922 | NA | 0 |
| LUAD | TCGA-MP-A4TK-01A | TCGA-MP-A4TK | TGFBR2|NR2C2 | TGFBR2 | NR2C2 | 3 | 3 | 1 | 1 | 3 | 2 | 2 | 1.4 | 30648469 | 15055096 | tier1 | Out-of-frame | 17740 | NA | 0 |
| SARC | TCGA-DX-A1L2-01A | TCGA-DX-A1L2 | TGFBR2|XPC | TGFBR2 | XPC | 3 | 3 | 1 | -1 | 58 | 63 | 58 | 0.18 | 30648469 | 14214562 | tier1 | In-frame | 17741 | non-validated | 0 |
| SARC | TCGA-DX-A3LS-01A | TCGA-DX-A3LS | HDAC11|CDH18 | HDAC11 | CDH18 | 3 | 5 | 1 | -1 | 24 | 19 | 18 | 1.3 | 13525064 | 19981287 | tier2 | CDS-5UTR | 7617 | non-validated | 0.36938 |
| BRCA | TCGA-A8-A081-01A | TCGA-A8-A081 | SERPINI1|NAALADL2 | SERPINI1 | NAALADL2 | 3 | 3 | 1 | 1 | 3 | 7 | 7 | 1.2 | 167453611 | 174814580 | tier1 | 5UTR-CDS | 15674 | NA | 0 |
| LGG | TCGA-HT-8011-01A | TCGA-HT-8011 | NUAK2|CYB5R1 | NUAK2 | CYB5R1 | 1 | 1 | -1 | -1 | 14 | 8 | 7 | 0.057 | 205290526 | 202936026 | tier1 | In-frame | 11845 | NA | 0.36832 |
| HNSC | TCGA-BA-6871-01A | TCGA-BA-6871 | NUAK2|LEMD1 | NUAK2 | LEMD1 | 1 | 1 | -1 | -1 | 115 | 84 | 73 | 100 | 205280833 | 205389702 | tier1 | CDS-5UTR | 11846 | NA | 0.36106 |
| BRCA | TCGA-D8-A27N-01A | TCGA-D8-A27N | PRKCI|TNIK | PRKCI | TNIK | 3 | 3 | 1 | -1 | 22 | 18 | 14 | 0.35 | 169953139 | 170912424 | tier1 | Out-of-frame | 13559 | NA | 0.38654 |
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