Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-HC-7213-01A | TCGA-HC-7213 | NCSTN|SREBF1 | NCSTN | SREBF1 | 1 | 17 | 1 | -1 | 2 | 3 | 3 | 0.46 | 160328736 | 17726944 | tier3 | 3UTR-5UTR | 11268 | NA | 0.3735 |
| PRAD | TCGA-2A-AAYU-01A | TCGA-2A-AAYU | ACP6|INTS7 | ACP6 | INTS7 | 1 | 1 | -1 | -1 | 4 | 2 | 2 | 0.98 | 147120048 | 212190365 | tier1 | Out-of-frame | 303 | NA | 0.3456 |
| SARC | TCGA-DX-AB3A-01A | TCGA-DX-AB3A | ACP6|PIAS3 | ACP6 | PIAS3 | 1 | 1 | -1 | 1 | 4 | 6 | 6 | 0.18 | 147141952 | 145578062 | tier1 | In-frame | 304 | NA | 0.36738 |
| UCEC | TCGA-EO-A1Y7-01A | TCGA-EO-A1Y7 | MAPKAPK2|PLA2G2A | MAPKAPK2 | PLA2G2A | 1 | 1 | 1 | -1 | 101 | 119 | 100 | 0.1 | 206858853 | 20305372 | tier1 | CDS-5UTR | 9962 | NA | 0.38212 |
| HNSC | TCGA-CV-5435-01A | TCGA-CV-5435 | MAPKAPK2|SRGAP2 | MAPKAPK2 | SRGAP2 | 1 | 1 | 1 | 1 | 71 | 25 | 19 | 0.052 | 206858853 | 206589249 | tier1 | NA | 9963 | NA | 0.38477 |
| PRAD | TCGA-CH-5761-01A | TCGA-CH-5761 | CAPN2|SMARCA1 | CAPN2 | SMARCA1 | 1 | X | 1 | -1 | 2 | 1 | 1 | 1.8 | 223963545 | 128652424 | tier3 | NA | 2961 | NA | 0.37221 |
| LUAD | TCGA-49-6743-01A | TCGA-49-6743 | REL|MVP | REL | MVP | 2 | 16 | 1 | 1 | 80 | 76 | 56 | 1.1 | 61144152 | 29847025 | tier1 | In-frame | 14537 | NA | 0 |
| LUSC | TCGA-60-2726-01A | TCGA-60-2726 | REL|MAN1A2 | REL | MAN1A2 | 2 | 1 | 1 | 1 | 6 | 3 | 3 | 0.96 | 61147777 | 118035769 | tier1 | In-frame | 14536 | non-validated | 0 |
| LUAD | TCGA-49-4514-01A | TCGA-49-4514 | CAPN13|GALNT14 | CAPN13 | GALNT14 | 2 | 2 | -1 | -1 | 10 | 6 | 4 | 0.075 | 31009994 | 31155060 | tier1 | Out-of-frame | 2959 | NA | 0.34893 |
| LUSC | TCGA-NC-A5HJ-01A | TCGA-NC-A5HJ | CAPN13|GALNT14 | CAPN13 | GALNT14 | 2 | 2 | -1 | -1 | 50 | 69 | 40 | 0.075 | 30980912 | 31147689 | tier1 | In-frame | 2960 | NA | 0.34893 |
| BRCA | TCGA-BH-A1FM-01A | TCGA-BH-A1FM | KCNJ3|GALNT13 | KCNJ3 | GALNT13 | 2 | 2 | 1 | 1 | 12 | 20 | 19 | 0.28 | 155566331 | 155252503 | tier1 | In-frame | 8576 | NA | 0.34714 |
| OV | TCGA-61-1998-01A | TCGA-61-1998 | ADCK3|EPHX1 | ADCK3 | EPHX1 | 1 | 1 | 1 | 1 | 14 | 12 | 10 | 1.2 | 227128100 | 226032199 | tier1 | 5UTR-CDS | 464 | NA | 0.32798 |
| LUAD | TCGA-78-7536-01A | TCGA-78-7536 | SLC16A14|SP110 | SLC16A14 | SP110 | 2 | 2 | -1 | -1 | 535 | 462 | 399 | 4.6 | 230914477 | 231076268 | tier1 | In-frame | 16028 | NA | 0 |
| SKCM | TCGA-EB-A6QY-01A | TCGA-EB-A6QY | CTSS|TDRD10 | CTSS | TDRD10 | 1 | 1 | -1 | 1 | 71 | 36 | 36 | 100 | 150720253 | 154519885 | tier1 | In-frame | 4408 | NA | 0.36088 |
| CESC | TCGA-VS-A958-01A | TCGA-VS-A958 | S100A9|PLAT | S100A9 | PLAT | 1 | 8 | 1 | -1 | 2 | 51 | 44 | 100 | 153333503 | 42051245 | tier3 | NA | 15250 | NA | 0 |
| CESC | TCGA-ZJ-AAX8-01A | TCGA-ZJ-AAX8 | S100A9|FOXP1 | S100A9 | FOXP1 | 1 | 3 | 1 | -1 | 2 | 6 | 4 | 100 | 153333503 | 71007472 | tier2 | NA | 15248 | NA | 0 |
| CESC | TCGA-EK-A2PL-01A | TCGA-EK-A2PL | S100A9|NDUFV1 | S100A9 | NDUFV1 | 1 | 11 | 1 | 1 | 2 | 15 | 11 | 0.009 | 153333503 | 67375697 | tier3 | NA | 15249 | NA | 0 |
| CESC | TCGA-MA-AA3X-01A | TCGA-MA-AA3X | S100A9|TCOF1 | S100A9 | TCOF1 | 1 | 5 | 1 | 1 | 2 | 2 | 1 | 0.1 | 153333503 | 149777917 | tier3 | 3UTR-CDS | 15251 | NA | 0 |
| STAD | TCGA-CG-4449-01A | TCGA-CG-4449 | HIPK1|LRRC42 | HIPK1 | LRRC42 | 1 | 1 | 1 | 1 | 3 | 9 | 9 | 0.048 | 114505060 | 54427707 | tier1 | Out-of-frame | 7768 | NA | 0.37965 |
| BRCA | TCGA-A2-A0CX-01A | TCGA-A2-A0CX | FAM19A4|CACNA2D3 | FAM19A4 | CACNA2D3 | 3 | 3 | -1 | 1 | 10 | 6 | 6 | 0.3 | 68981391 | 54786626 | tier1 | 5UTR-CDS | 6151 | NA | 0.34098 |
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