Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
| Showing page 223 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUSC | TCGA-77-8009-01A | TCGA-77-8009 | TPCN2|TMEM179B | TPCN2 | TMEM179B | 11 | 11 | 1 | 1 | 24 | 39 | 36 | 0.041 | 68816574 | 62556495 | tier1 | Out-of-frame | 18481 | NA | 0 |
| SKCM | TCGA-EE-A2MD-06A | TCGA-EE-A2MD | PRKAA2|USP24 | PRKAA2 | USP24 | 1 | 1 | 1 | -1 | 13 | 3 | 2 | 0.024 | 57111154 | 55541196 | tier1 | Out-of-frame | 13520 | NA | 0.37913 |
| OV | TCGA-09-1667-01C | TCGA-09-1667 | JAK1|HSD11B1 | JAK1 | HSD11B1 | 1 | 1 | -1 | 1 | 2 | 1 | 1 | 100 | 65432016 | 209878262 | tier2 | 5UTR-5UTR | 8469 | NA | 0.38099 |
| BRCA | TCGA-AC-A6IW-01A | TCGA-AC-A6IW | ALPL|FILIP1L | ALPL | FILIP1L | 1 | 3 | 1 | -1 | 5 | 4 | 2 | 0.11 | 21836010 | 99549449 | tier1 | NA | 850 | NA | 0.34588 |
| SARC | TCGA-DX-AB2V-01A | TCGA-DX-AB2V | ALPL|EIF4G3 | ALPL | EIF4G3 | 1 | 1 | 1 | -1 | 2 | 1 | 1 | 0.16 | 21889777 | 21154191 | tier2 | Out-of-frame | 849 | NA | 0.36282 |
| TGCT | TCGA-YU-AA61-01A | TCGA-YU-AA61 | MYSM1|ATG4C | MYSM1 | ATG4C | 1 | 1 | -1 | 1 | 2 | 3 | 3 | 2.8 | 59165657 | 63329663 | tier4 | Out-of-frame | 11023 | NA | 0.35294 |
| BRCA | TCGA-BH-A18L-01A | TCGA-BH-A18L | MYSM1|APOM | MYSM1 | APOM | 1 | 6 | -1 | 1 | 69 | 90 | 83 | 0.33 | 59160801 | 31624249 | tier1 | In-frame | 11022 | NA | 0.34926 |
| BRCA | TCGA-A7-A5ZV-01A | TCGA-A7-A5ZV | MYSM1|ALG14 | MYSM1 | ALG14 | 1 | 1 | -1 | -1 | 69 | 85 | 69 | 0.28 | 59165657 | 95448862 | tier1 | Out-of-frame | 11021 | NA | 0.34849 |
| LUSC | TCGA-85-A513-01A | TCGA-85-A513 | MYSM1|DAB1 | MYSM1 | DAB1 | 1 | 1 | -1 | -1 | 5 | 3 | 3 | 0.45 | 59150825 | 57611102 | tier1 | Out-of-frame | 11024 | NA | 0.37687 |
| UCEC | TCGA-EY-A54A-01A | TCGA-EY-A54A | TM2D1|STOX2 | TM2D1 | STOX2 | 1 | 4 | -1 | 1 | 4 | 2 | 2 | 0.72 | 62189385 | 184922478 | tier1 | In-frame | 17861 | NA | 0 |
| BRCA | TCGA-AR-A24S-01A | TCGA-AR-A24S | USP1|SGIP1 | USP1 | SGIP1 | 1 | 1 | 1 | 1 | 14 | 14 | 9 | 4 | 62914337 | 67091530 | tier1 | Out-of-frame | 19300 | NA | 0 |
| PRAD | TCGA-J9-A8CK-01A | TCGA-J9-A8CK | USP1|EFCAB7 | USP1 | EFCAB7 | 1 | 1 | 1 | 1 | 19 | 18 | 17 | 0.33 | 62903071 | 64027380 | tier1 | 5UTR-CDS | 19299 | NA | 0 |
| SKCM | TCGA-D9-A4Z5-01A | TCGA-D9-A4Z5 | NTNG1|CALN1 | NTNG1 | CALN1 | 1 | 7 | 1 | -1 | 2 | 2 | 2 | 0.46 | 107691461 | 71252887 | tier3 | Out-of-frame | 11837 | NA | 0.35558 |
| BRCA | TCGA-EW-A1OV-01A | TCGA-EW-A1OV | SLC30A7|HHIPL2 | SLC30A7 | HHIPL2 | 1 | 1 | 1 | -1 | 2 | 4 | 3 | 0.21 | 101379362 | 222705453 | tier3 | Out-of-frame | 16147 | NA | 0 |
| PRAD | TCGA-HC-8259-01A | TCGA-HC-8259 | SLC30A7|CMTM8 | SLC30A7 | CMTM8 | 1 | 3 | 1 | 1 | 19 | 6 | 6 | 0.33 | 101362227 | 32409364 | tier1 | Out-of-frame | 16146 | NA | 0 |
| SKCM | TCGA-EB-A430-01A | TCGA-EB-A430 | DDR2|FMO4 | DDR2 | FMO4 | 1 | 1 | 1 | 1 | 66 | 25 | 23 | 3.1 | 162625164 | 171293277 | tier1 | 5UTR-CDS | 4642 | NA | 0.38229 |
| BRCA | TCGA-BH-A18V-01A | TCGA-BH-A18V | DDR2|GAB1 | DDR2 | GAB1 | 1 | 4 | 1 | 1 | 3 | 8 | 8 | 3.2 | 162688935 | 144336630 | tier1 | Out-of-frame | 4643 | NA | 0.38497 |
| SARC | TCGA-3B-A9HO-01A | TCGA-3B-A9HO | DDR2|CHD1L | DDR2 | CHD1L | 1 | 1 | 1 | 1 | 9 | 5 | 5 | 0.34 | 162625164 | 146724278 | tier1 | 5UTR-CDS | 4641 | NA | 0.38278 |
| BRCA | TCGA-BH-A1FD-01A | TCGA-BH-A1FD | NCSTN|ATP1A4 | NCSTN | ATP1A4 | 1 | 1 | 1 | 1 | 14 | 7 | 5 | 1.4 | 160314616 | 160145882 | tier1 | In-frame | 11266 | NA | 0.3648 |
| LUAD | TCGA-97-A4M3-01A | TCGA-97-A4M3 | NCSTN|SPRR2G | NCSTN | SPRR2G | 1 | 1 | 1 | -1 | 753 | 688 | 629 | 0.73 | 160324080 | 153122607 | tier1 | CDS-5UTR | 11267 | NA | 0.35932 |
|
Showing page 223 |
first page | previous page | next page | last page |
Copyright © 2020 University of Pennsylvania. All Rights Reserved.