Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-OL-A66P-01A | TCGA-OL-A66P | CXCL16|TEKT1 | CXCL16 | TEKT1 | 17 | 17 | -1 | -1 | 3 | 3 | 3 | 3.4 | 4641703 | 6722677 | tier1 | In-frame | 4477 | NA | 0.33845 |
| GBM | TCGA-14-1034-01A | TCGA-14-1034 | EIF4A1|PHOSPHO1 | EIF4A1 | PHOSPHO1 | 17 | 17 | 1 | -1 | 23 | 85 | 76 | 1.8 | 7478576 | 47302366 | tier1 | In-frame | 5453 | validated | 0.36624 |
| BRCA | TCGA-E9-A1RH-01A | TCGA-E9-A1RH | ADCY9|GLYR1 | ADCY9 | GLYR1 | 16 | 16 | -1 | -1 | 61 | 46 | 35 | 1 | 4038995 | 4862249 | tier1 | In-frame | 477 | NA | 0.34134 |
| LUSC | TCGA-33-4533-01A | TCGA-33-4533 | ADCY9|PRKCB | ADCY9 | PRKCB | 16 | 16 | -1 | 1 | 19 | 10 | 8 | 0.052 | 4163751 | 23999829 | tier1 | In-frame | 480 | NA | 0.38191 |
| LGG | TCGA-KT-A7W1-01A | TCGA-KT-A7W1 | ADCY9|VASN | ADCY9 | VASN | 16 | 16 | -1 | 1 | 4 | 3 | 3 | 0.063 | 4163751 | 4430870 | tier1 | CDS-5UTR | 488 | NA | 0.36039 |
| BRCA | TCGA-LL-A5YP-01A | TCGA-LL-A5YP | ADCY9|PRSS27 | ADCY9 | PRSS27 | 16 | 16 | -1 | -1 | 3 | 1 | 1 | 0.16 | 4038995 | 2766527 | tier2 | Out-of-frame | 481 | NA | 0.34897 |
| BLCA | TCGA-FD-A3N6-01A | TCGA-FD-A3N6 | ADCY9|TFAP4 | ADCY9 | TFAP4 | 16 | 16 | -1 | -1 | 6 | 4 | 3 | 0.004 | 4163751 | 4312702 | tier1 | Out-of-frame | 487 | non-validated | 0.34662 |
| BRCA | TCGA-S3-AA0Z-01A | TCGA-S3-AA0Z | ADCY9|RMI2 | ADCY9 | RMI2 | 16 | 16 | -1 | 1 | 4 | 2 | 1 | 1.4 | 4163751 | 11444499 | tier2 | In-frame | 483 | NA | 0.34134 |
| BRCA | TCGA-A2-A0T7-01A | TCGA-A2-A0T7 | ADCY9|SRL | ADCY9 | SRL | 16 | 16 | -1 | -1 | 11 | 5 | 5 | 0.44 | 4163751 | 4245787 | tier1 | In-frame | 485 | NA | 0.34372 |
| LGG | TCGA-DB-A64L-01A | TCGA-DB-A64L | ADCY9|NMRAL1 | ADCY9 | NMRAL1 | 16 | 16 | -1 | -1 | 5 | 1 | 1 | 1.3 | 4163751 | 4519466 | tier2 | In-frame | 478 | NA | 0.34687 |
| LGG | TCGA-TM-A84I-01A | TCGA-TM-A84I | ADCY9|RASSF8 | ADCY9 | RASSF8 | 16 | 12 | -1 | 1 | 16 | 19 | 17 | 5.3 | 4163751 | 26231966 | tier2 | In-frame | 482 | NA | 0.36683 |
| LGG | TCGA-TM-A84I-01A | TCGA-TM-A84I | ADCY9|TEAD4 | ADCY9 | TEAD4 | 16 | 12 | -1 | 1 | 186 | 144 | 131 | 0.038 | 4163751 | 3103904 | tier2 | NA | 486 | NA | 0.36166 |
| LIHC | TCGA-ED-A4XI-01A | TCGA-ED-A4XI | ADCY9|PHF16 | ADCY9 | PHF16 | 16 | X | -1 | 1 | 3 | 4 | 3 | 0.11 | 4163751 | 46844285 | tier1 | CDS-5UTR | 479 | non-validated | 0.34925 |
| OV | TCGA-29-A5NZ-01A | TCGA-29-A5NZ | ADCY9|FAHD1 | ADCY9 | FAHD1 | 16 | 16 | -1 | 1 | 2 | 3 | 3 | 0.54 | 4163751 | 1888017 | tier4 | Out-of-frame | 475 | NA | 0.34608 |
| SARC | TCGA-HB-A3L4-01A | TCGA-HB-A3L4 | ADCY9|SPG20 | ADCY9 | SPG20 | 16 | 13 | -1 | -1 | 12 | 5 | 4 | 0.003 | 4033233 | 36903654 | tier1 | Out-of-frame | 484 | NA | 0.36254 |
| UCEC | TCGA-PG-A7D5-01A | TCGA-PG-A7D5 | ADCY9|CLUAP1 | ADCY9 | CLUAP1 | 16 | 16 | -1 | 1 | 3 | 9 | 7 | 0.45 | 4163751 | 3573158 | tier1 | Out-of-frame | 474 | NA | 0.35019 |
| UCEC | TCGA-B5-A1MS-01B | TCGA-B5-A1MS | ADCY9|FAM65C | ADCY9 | FAM65C | 16 | 20 | -1 | -1 | 9 | 2 | 2 | 0.35 | 4163751 | 49247393 | tier1 | CDS-5UTR | 476 | NA | 0.34986 |
| ACC | TCGA-P6-A5OF-01A | TCGA-P6-A5OF | RPS6KA4|CCDC88B | RPS6KA4 | CCDC88B | 11 | 11 | 1 | 1 | 8 | 1 | 1 | 0.013 | 64132937 | 64116803 | tier4 | In-frame | 15053 | NA | 0 |
| SKCM | TCGA-EB-A82B-01A | TCGA-EB-A82B | RPS6KA4|C11orf20 | RPS6KA4 | C11orf20 | 11 | 11 | 1 | 1 | 536 | 286 | 272 | 1.2 | 64126921 | 64070954 | tier1 | In-frame | 15052 | NA | 0 |
| BRCA | TCGA-EW-A1IW-01A | TCGA-EW-A1IW | TPCN2|RARA | TPCN2 | RARA | 11 | 17 | 1 | 1 | 14 | 16 | 10 | 0.16 | 68830458 | 38487109 | tier1 | CDS-5UTR | 18480 | NA | 0 |
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