Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LAML | TCGA-AB-2832-03A | TCGA-AB-2832 | SIK3|C11orf1 | SIK3 | C11orf1 | 11 | 11 | -1 | 1 | 7 | 6 | 6 | 2.3 | 116968859 | 111753092 | tier1 | In-frame | 15915 | NA | 0 |
| PRAD | TCGA-J4-A67Q-01A | TCGA-J4-A67Q | FDPS|IPO9 | FDPS | IPO9 | 1 | 1 | 1 | 1 | 4 | 2 | 2 | 2.1 | 155282186 | 201840289 | tier1 | In-frame | 6414 | NA | 0.35524 |
| LIHC | TCGA-BC-A8YO-01A | TCGA-BC-A8YO | SLC25A44|PALM2-AKAP2 | SLC25A44 | PALM2-AKAP2 | 1 | 9 | 1 | 1 | 48 | 12 | 11 | 0.27 | 156164038 | 112918599 | tier1 | 5UTR-CDS | 16116 | NA | 0 |
| LUSC | TCGA-O2-A52Q-01A | TCGA-O2-A52Q | SLC25A44|SEMA4A | SLC25A44 | SEMA4A | 1 | 1 | 1 | 1 | 32 | 12 | 9 | 0.01 | 156164038 | 156142617 | tier1 | 5UTR-CDS | 16119 | NA | 0 |
| UCEC | TCGA-AX-A2H4-01A | TCGA-AX-A2H4 | SLC25A44|RAB33A | SLC25A44 | RAB33A | 1 | X | 1 | 1 | 4 | 3 | 3 | 0.54 | 156164038 | 129318259 | tier1 | 5UTR-CDS | 16117 | NA | 0 |
| UCEC | TCGA-B5-A0JN-01A | TCGA-B5-A0JN | SLC25A44|SEMA4A | SLC25A44 | SEMA4A | 1 | 1 | 1 | 1 | 6 | 3 | 3 | 0.01 | 156164038 | 156142617 | tier1 | 5UTR-CDS | 16118 | non-validated | 0 |
| BRCA | TCGA-A2-A3XU-01A | TCGA-A2-A3XU | LMNA|PTN | LMNA | PTN | 1 | 7 | 1 | -1 | 2 | 71 | 40 | 0.052 | 156107656 | 136938384 | tier4 | 3UTR-CDS | 9403 | NA | 0.38011 |
| UCEC | TCGA-EO-A3AY-01A | TCGA-EO-A3AY | LMNA|IGFBP2 | LMNA | IGFBP2 | 1 | 2 | 1 | 1 | 2 | 1 | 1 | 0.16 | 156109108 | 217525456 | tier4 | NA | 9402 | NA | 0.37951 |
| BRCA | TCGA-AQ-A54N-01A | TCGA-AQ-A54N | LMNA|SYT11 | LMNA | SYT11 | 1 | 1 | 1 | 1 | 4 | 3 | 3 | 2.1 | 156085065 | 155850291 | tier1 | Out-of-frame | 9404 | NA | 0.37876 |
| BRCA | TCGA-E9-A5UO-01A | TCGA-E9-A5UO | AZGP1|TYK2 | AZGP1 | TYK2 | 7 | 19 | -1 | -1 | 2 | 25 | 16 | 1.1 | 99564354 | 10491352 | tier3 | NA | 1841 | NA | 0.37842 |
| BRCA | TCGA-BH-A28Q-01A | TCGA-BH-A28Q | AZGP1|FAR1 | AZGP1 | FAR1 | 7 | 11 | -1 | 1 | 2 | 6 | 3 | 1.5 | 99564354 | 13744912 | tier4 | NA | 1840 | NA | 0.36109 |
| LUAD | TCGA-69-8255-01A | TCGA-69-8255 | EMID2|BET1 | EMID2 | BET1 | 7 | 7 | 1 | -1 | 4 | 6 | 6 | 1.9 | 101006471 | 93623697 | tier1 | Out-of-frame | 5545 | NA | 0.36496 |
| LUAD | TCGA-78-7163-01A | TCGA-78-7163 | SCGB3A1|CAST | SCGB3A1 | CAST | 5 | 5 | -1 | 1 | 3 | 1 | 1 | 100 | 180017103 | 95997778 | tier3 | 3UTR-5UTR | 15409 | NA | 0 |
| SKCM | TCGA-D3-A1Q3-06A | TCGA-D3-A1Q3 | C19orf28|CLASP2 | C19orf28 | CLASP2 | 19 | 3 | -1 | -1 | 2 | 2 | 2 | 2.1 | 3544198 | 33602368 | tier3 | NA | 2575 | NA | 0 |
| BLCA | TCGA-XF-AAMX-01A | TCGA-XF-AAMX | BDH1|C7orf60 | BDH1 | C7orf60 | 3 | 7 | -1 | -1 | 7 | 3 | 3 | 0.041 | 197273232 | 112472730 | tier1 | In-frame | 2066 | NA | 0 |
| LGG | TCGA-HT-A5RA-01A | TCGA-HT-A5RA | BDH1|ZBBX | BDH1 | ZBBX | 3 | 3 | -1 | -1 | 36 | 20 | 19 | 1.4 | 197249511 | 166960431 | tier1 | In-frame | 2067 | NA | 0.34053 |
| BRCA | TCGA-AR-A251-01A | TCGA-AR-A251 | PRPSAP1|ST6GALNAC2 | PRPSAP1 | ST6GALNAC2 | 17 | 17 | -1 | -1 | 16 | 13 | 13 | 0.58 | 74344610 | 74574898 | tier1 | Out-of-frame | 13609 | NA | 0.35705 |
| LIHC | TCGA-BC-A217-01A | TCGA-BC-A217 | ITGA5|GTSF1 | ITGA5 | GTSF1 | 12 | 12 | -1 | -1 | 235 | 188 | 165 | 0.89 | 54801433 | 54857081 | tier1 | In-frame | 8382 | validated | 0.36781 |
| LUSC | TCGA-39-5035-01A | TCGA-39-5035 | ITGA5|GTSF1 | ITGA5 | GTSF1 | 12 | 12 | -1 | -1 | 2 | 2 | 2 | 0.89 | 54795157 | 54858951 | tier4 | Out-of-frame | 8381 | NA | 0.36781 |
| BRCA | TCGA-A8-A08I-01A | TCGA-A8-A08I | C19orf63|MBOAT7 | C19orf63 | MBOAT7 | 19 | 19 | 1 | -1 | 12 | 18 | 18 | 0.052 | 50984234 | 54692365 | tier1 | CDS-5UTR | 2583 | NA | 0 |
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