Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-D8-A1XZ-01A | TCGA-D8-A1XZ | TAOK1|PARP10 | TAOK1 | PARP10 | 17 | 8 | 1 | -1 | 4 | 3 | 3 | 0.58 | 27818883 | 145060606 | tier1 | NA | 17401 | NA | 0 |
| BLCA | TCGA-DK-A1AC-01A | TCGA-DK-A1AC | TAOK1|RB1CC1 | TAOK1 | RB1CC1 | 17 | 8 | 1 | -1 | 60 | 57 | 53 | 0.32 | 27809306 | 53555372 | tier1 | Out-of-frame | 17405 | NA | 0 |
| BRCA | TCGA-A1-A0SM-01A | TCGA-A1-A0SM | TAOK1|ACER3 | TAOK1 | ACER3 | 17 | 11 | 1 | 1 | 14 | 19 | 18 | 1.2 | 27825539 | 76687333 | tier1 | In-frame | 17391 | non-validated | 0 |
| BRCA | TCGA-E9-A22D-01A | TCGA-E9-A22D | TAOK1|C17orf63 | TAOK1 | C17orf63 | 17 | 17 | 1 | -1 | 3 | 5 | 5 | 0.7 | 27718042 | 27093725 | tier2 | 5UTR-5UTR | 17395 | NA | 0 |
| BRCA | TCGA-E9-A228-01A | TCGA-E9-A228 | TAOK1|FLOT2 | TAOK1 | FLOT2 | 17 | 17 | 1 | -1 | 29 | 16 | 15 | 0.13 | 27718042 | 27216044 | tier1 | 5UTR-CDS | 17398 | NA | 0 |
| BRCA | TCGA-BH-A18G-01A | TCGA-BH-A18G | TAOK1|PIPOX | TAOK1 | PIPOX | 17 | 17 | 1 | 1 | 3 | 2 | 2 | 0.033 | 27794234 | 27371877 | tier1 | In-frame | 17402 | NA | 0 |
| CHOL | TCGA-W5-AA31-01A | TCGA-W5-AA31 | TAOK1|NCOR1 | TAOK1 | NCOR1 | 17 | 17 | 1 | -1 | 39 | 19 | 17 | 0.12 | 27838010 | 15984041 | tier2 | In-frame | 17399 | NA | 0 |
| COAD | TCGA-AZ-4323-01A | TCGA-AZ-4323 | TAOK1|VMP1 | TAOK1 | VMP1 | 17 | 17 | 1 | 1 | 58 | 44 | 37 | 0.36 | 27844674 | 57842332 | tier1 | In-frame | 17407 | NA | 0 |
| LGG | TCGA-TQ-A7RJ-01A | TCGA-TQ-A7RJ | TAOK1|C17orf105 | TAOK1 | C17orf105 | 17 | 17 | 1 | 1 | 39 | 23 | 21 | 0.14 | 27838010 | 41861751 | tier1 | CDS-3UTR | 17394 | NA | 0 |
| LGG | TCGA-DB-A75P-01A | TCGA-DB-A75P | TAOK1|TMEM97 | TAOK1 | TMEM97 | 17 | 17 | 1 | 1 | 2 | 1 | 1 | 0.42 | 27718042 | 26652529 | tier3 | 5UTR-CDS | 17406 | NA | 0 |
| LUAD | TCGA-91-6847-01A | TCGA-91-6847 | TAOK1|BCAS3 | TAOK1 | BCAS3 | 17 | 17 | 1 | 1 | 17 | 10 | 8 | 2.1 | 27838010 | 58885365 | tier1 | Out-of-frame | 17393 | non-validated | 0 |
| LUAD | TCGA-44-2659-01A | TCGA-44-2659 | TAOK1|ZNF385C | TAOK1 | ZNF385C | 17 | 17 | 1 | -1 | 4 | 4 | 3 | 0.072 | 27778698 | 40186353 | tier1 | In-frame | 17408 | non-validated | 0 |
| LUSC | TCGA-77-8148-01A | TCGA-77-8148 | TAOK1|NF1 | TAOK1 | NF1 | 17 | 17 | 1 | 1 | 2 | 1 | 1 | 0.17 | 27829741 | 29652838 | tier3 | Out-of-frame | 17400 | NA | 0 |
| PRAD | TCGA-G9-6363-01A | TCGA-G9-6363 | TAOK1|ABHD15 | TAOK1 | ABHD15 | 17 | 17 | 1 | -1 | 9 | 7 | 6 | 0.56 | 27829741 | 27890104 | tier1 | Out-of-frame | 17390 | NA | 0 |
| SKCM | TCGA-EE-A2MR-06A | TCGA-EE-A2MR | TAOK1|ASGR2 | TAOK1 | ASGR2 | 17 | 17 | 1 | -1 | 15 | 16 | 2 | 2.9 | 27835150 | 7018130 | tier1 | CDS-5UTR | 17392 | NA | 0 |
| STAD | TCGA-BR-A4QI-01A | TCGA-BR-A4QI | TAOK1|PROCA1 | TAOK1 | PROCA1 | 17 | 17 | 1 | -1 | 4 | 35 | 32 | 0.26 | 27718042 | 27031861 | tier1 | 5UTR-CDS | 17403 | NA | 0 |
| LUAD | TCGA-73-4658-01A | TCGA-73-4658 | SIK3|CD3D | SIK3 | CD3D | 11 | 11 | -1 | -1 | 3 | 4 | 4 | 0.67 | 116968859 | 118210209 | tier1 | Out-of-frame | 15916 | NA | 0 |
| ACC | TCGA-OR-A5K5-01A | TCGA-OR-A5K5 | SIK3|CTNNBIP1 | SIK3 | CTNNBIP1 | 11 | 1 | -1 | -1 | 50 | 38 | 34 | 0.056 | 116968859 | 9910834 | tier1 | Out-of-frame | 15918 | NA | 0 |
| BRCA | TCGA-EW-A2FR-01A | TCGA-EW-A2FR | SIK3|PPP1R1B | SIK3 | PPP1R1B | 11 | 17 | -1 | 1 | 101 | 91 | 83 | 0.41 | 116968859 | 37785423 | tier1 | In-frame | 15919 | NA | 0 |
| HNSC | TCGA-CQ-A4C7-01A | TCGA-CQ-A4C7 | SIK3|CNTN5 | SIK3 | CNTN5 | 11 | 11 | -1 | 1 | 5 | 1 | 1 | 0.12 | 116797935 | 100126492 | tier4 | In-frame | 15917 | NA | 0 |
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