Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-KK-A8ID-01A | TCGA-KK-A8ID | PDE9A|SLC37A1 | PDE9A | SLC37A1 | 21 | 21 | 1 | 1 | 3 | 4 | 4 | 0.27 | 44174174 | 43922406 | tier1 | CDS-5UTR | 12521 | NA | 0.3526 |
| PRAD | TCGA-ZG-A9L2-01A | TCGA-ZG-A9L2 | PDE9A|TMPRSS2 | PDE9A | TMPRSS2 | 21 | 21 | 1 | -1 | 17 | 24 | 23 | 0.83 | 44153536 | 42870116 | tier1 | CDS-5UTR | 12522 | NA | 0.3564 |
| LUAD | TCGA-05-4397-01A | TCGA-05-4397 | PDXK|LCA5L | PDXK | LCA5L | 21 | 21 | 1 | -1 | 10 | 20 | 17 | 0.19 | 45168961 | 40801137 | tier1 | CDS-5UTR | 12581 | validated | 0.34351 |
| SARC | TCGA-3B-A9HO-01A | TCGA-3B-A9HO | PDXK|LIN7A | PDXK | LIN7A | 21 | 12 | 1 | -1 | 7 | 6 | 6 | 1.6 | 45163688 | 81283148 | tier1 | In-frame | 12582 | NA | 0.3684 |
| UCEC | TCGA-D1-A3JP-01A | TCGA-D1-A3JP | G6PD|STAT6 | G6PD | STAT6 | X | 12 | -1 | -1 | 2 | 54 | 28 | 0.11 | 153759606 | 57496773 | tier3 | NA | 6880 | NA | 0.37296 |
| BRCA | TCGA-BH-A0B5-01A | TCGA-BH-A0B5 | G6PD|F8 | G6PD | F8 | X | X | -1 | -1 | 13 | 21 | 19 | 0.85 | 153774251 | 154091502 | tier1 | In-frame | 6879 | NA | 0.36618 |
| CESC | TCGA-C5-A1MH-01A | TCGA-C5-A1MH | ITGB2|CD74 | ITGB2 | CD74 | 21 | 5 | -1 | -1 | 2 | 4 | 1 | 0.016 | 46351729 | 149792295 | tier4 | NA | 8396 | NA | 0.38435 |
| SARC | TCGA-IF-A4AK-01A | TCGA-IF-A4AK | LSS|EIF4ENIF1 | LSS | EIF4ENIF1 | 21 | 22 | -1 | -1 | 4 | 3 | 3 | 0.58 | 47625750 | 31859953 | tier1 | Out-of-frame | 9639 | NA | 0.3557 |
| SKCM | TCGA-GN-A263-01A | TCGA-GN-A263 | S100B|TCTN1 | S100B | TCTN1 | 21 | 12 | -1 | 1 | 2 | 6 | 1 | 100 | 48018875 | 111082513 | tier3 | NA | 15252 | NA | 0 |
| BRCA | TCGA-AR-A0U4-01A | TCGA-AR-A0U4 | PRMT2|DIP2A | PRMT2 | DIP2A | 21 | 21 | 1 | 1 | 12 | 26 | 21 | 0.061 | 48064400 | 47985626 | tier1 | In-frame | 13583 | NA | 0.37314 |
| HNSC | TCGA-D6-A4ZB-01A | TCGA-D6-A4ZB | PRMT2|WRB | PRMT2 | WRB | 21 | 21 | 1 | 1 | 6 | 3 | 2 | 0.047 | 48069651 | 40762624 | tier1 | In-frame | 13585 | NA | 0.37082 |
| LUAD | TCGA-93-A4JP-01A | TCGA-93-A4JP | PRMT2|STX18 | PRMT2 | STX18 | 21 | 4 | 1 | -1 | 2 | 7 | 5 | 2.7 | 48068531 | 4473433 | tier3 | In-frame | 13584 | NA | 0.37124 |
| BRCA | TCGA-AC-A2BM-01A | TCGA-AC-A2BM | ADAMTS13|LHX2 | ADAMTS13 | LHX2 | 9 | 9 | 1 | 1 | 3 | 3 | 2 | 0.12 | 136315086 | 126794699 | tier1 | Out-of-frame | 431 | NA | 0.37324 |
| BRCA | TCGA-A2-A0D0-01A | TCGA-A2-A0D0 | RDH13|NLRP9 | RDH13 | NLRP9 | 19 | 19 | -1 | -1 | 5 | 2 | 2 | 0.37 | 55568021 | 56228264 | tier1 | Out-of-frame | 14523 | validated | 0 |
| BRCA | TCGA-A8-A08F-01A | TCGA-A8-A08F | RDH13|RUSC1 | RDH13 | RUSC1 | 19 | 1 | -1 | 1 | 7 | 5 | 5 | 0.009 | 55568021 | 155297941 | tier1 | Out-of-frame | 14526 | NA | 0 |
| LUAD | TCGA-55-8505-01A | TCGA-55-8505 | RDH13|PPP6R1 | RDH13 | PPP6R1 | 19 | 19 | -1 | -1 | 29 | 4 | 3 | 0.39 | 55568021 | 55758477 | tier1 | CDS-5UTR | 14525 | NA | 0 |
| STAD | TCGA-BR-4357-01A | TCGA-BR-4357 | RDH13|NLRP9 | RDH13 | NLRP9 | 19 | 19 | -1 | -1 | 9 | 5 | 5 | 0.37 | 55580690 | 56223956 | tier1 | 5UTR-CDS | 14524 | NA | 0 |
| UCEC | TCGA-EY-A2OQ-01A | TCGA-EY-A2OQ | TAOK1|CPD | TAOK1 | CPD | 17 | 17 | 1 | 1 | 26 | 27 | 26 | 1.5 | 27718042 | 28747859 | tier1 | 5UTR-CDS | 17397 | NA | 0 |
| BRCA | TCGA-BH-A0DZ-01A | TCGA-BH-A0DZ | TAOK1|CCL2 | TAOK1 | CCL2 | 17 | 17 | 1 | 1 | 5 | 1 | 1 | 0.42 | 27857637 | 32583241 | tier2 | Out-of-frame | 17396 | NA | 0 |
| GBM | TCGA-06-0141-01A | TCGA-06-0141 | TAOK1|RARA | TAOK1 | RARA | 17 | 17 | 1 | 1 | 2 | 8 | 8 | 0.56 | 27718042 | 38504568 | tier3 | 5UTR-CDS | 17404 | NA | 0 |
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