Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| COAD | TCGA-A6-6650-01B | TCGA-A6-6650 | PSKH1|C16orf87 | PSKH1 | C16orf87 | 16 | 16 | 1 | -1 | 2 | 2 | 2 | 100 | 67943609 | 46858394 | tier3 | In-frame | 13700 | non-validated | 0 |
| HNSC | TCGA-UF-A71A-06A | TCGA-UF-A71A | PSKH1|DAP | PSKH1 | DAP | 16 | 5 | 1 | -1 | 5 | 3 | 3 | 0.29 | 67943609 | 10683683 | tier1 | Out-of-frame | 13701 | NA | 0.37006 |
| BRCA | TCGA-AO-A1KR-01A | TCGA-AO-A1KR | CPAMD8|HAUS8 | CPAMD8 | HAUS8 | 19 | 19 | -1 | -1 | 3 | 4 | 4 | 0.088 | 17085907 | 17160986 | tier1 | Out-of-frame | 4099 | NA | 0.34872 |
| CESC | TCGA-EA-A556-01A | TCGA-EA-A556 | CPAMD8|SKAP1 | CPAMD8 | SKAP1 | 19 | 17 | -1 | -1 | 5 | 3 | 2 | 0.096 | 17049205 | 46239931 | tier1 | In-frame | 4100 | NA | 0.37697 |
| ESCA | TCGA-L5-A8NI-01A | TCGA-L5-A8NI | NR2F6|USHBP1 | NR2F6 | USHBP1 | 19 | 19 | -1 | -1 | 12 | 113 | 97 | 0.55 | 17355752 | 17362826 | tier1 | Out-of-frame | 11723 | NA | 0.37371 |
| HNSC | TCGA-D6-6516-01A | TCGA-D6-6516 | NR2F6|USHBP1 | NR2F6 | USHBP1 | 19 | 19 | -1 | -1 | 51 | 13 | 13 | 0.55 | 17351480 | 17362826 | tier1 | Out-of-frame | 11722 | NA | 0.37371 |
| UCEC | TCGA-5B-A90C-01A | TCGA-5B-A90C | NR2F6|PLVAP | NR2F6 | PLVAP | 19 | 19 | -1 | -1 | 9 | 11 | 11 | 0.51 | 17351480 | 17477004 | tier1 | Out-of-frame | 11721 | NA | 0.37072 |
| UCEC | TCGA-A5-A1OH-01A | TCGA-A5-A1OH | KALRN|CREB5 | KALRN | CREB5 | 3 | 7 | 1 | 1 | 8 | 3 | 3 | 0.078 | 124352800 | 28527793 | tier1 | In-frame | 8512 | NA | 0.38556 |
| UCEC | TCGA-B5-A3FB-01A | TCGA-B5-A3FB | ABCG1|BACE2 | ABCG1 | BACE2 | 21 | 21 | 1 | 1 | 28 | 8 | 6 | 0.11 | 43708422 | 42598193 | tier1 | In-frame | 78 | NA | 0.35531 |
| LUSC | TCGA-43-5670-01A | TCGA-43-5670 | ABCG1|CCDC134 | ABCG1 | CCDC134 | 21 | 22 | 1 | 1 | 4 | 10 | 9 | 0.54 | 43714770 | 42204879 | tier2 | CDS-5UTR | 80 | non-validated | 0.35489 |
| LUSC | TCGA-43-5670-01A | TCGA-43-5670 | ABCG1|MEI1 | ABCG1 | MEI1 | 21 | 22 | 1 | 1 | 2 | 3 | 3 | 2.9 | 43714770 | 42195258 | tier2 | In-frame | 81 | non-validated | 0.35236 |
| PAAD | TCGA-3E-AAAY-01A | TCGA-3E-AAAY | ABCG1|BTG3 | ABCG1 | BTG3 | 21 | 21 | 1 | -1 | 5 | 2 | 1 | 0.64 | 43646024 | 18981470 | tier3 | CDS-5UTR | 79 | NA | 0.35811 |
| LUAD | TCGA-97-7552-01A | TCGA-97-7552 | TFF1|RABEP1 | TFF1 | RABEP1 | 21 | 17 | -1 | 1 | 2 | 161 | 123 | 100 | 43782391 | 5283828 | tier3 | NA | 17721 | NA | 0 |
| STAD | TCGA-BR-8687-01A | TCGA-BR-8687 | TFF1|DDX21 | TFF1 | DDX21 | 21 | 10 | -1 | 1 | 2 | 97 | 19 | 100 | 43782391 | 70723858 | tier4 | NA | 17720 | NA | 0 |
| PRAD | TCGA-EJ-5504-01A | TCGA-EJ-5504 | SLC37A1|MTA1 | SLC37A1 | MTA1 | 21 | 14 | 1 | 1 | 2 | 1 | 1 | 0.37 | 43988548 | 105932763 | tier3 | In-frame | 16171 | NA | 0 |
| BRCA | TCGA-A2-A0CW-01A | TCGA-A2-A0CW | SLC37A1|NT5C3 | SLC37A1 | NT5C3 | 21 | 7 | 1 | -1 | 8 | 4 | 4 | 0.81 | 43974252 | 33059336 | tier1 | Out-of-frame | 16172 | NA | 0 |
| BRCA | TCGA-A2-A3XY-01A | TCGA-A2-A3XY | SLC37A1|PCNT | SLC37A1 | PCNT | 21 | 21 | 1 | 1 | 14 | 15 | 14 | 1.4 | 43987168 | 47831103 | tier1 | In-frame | 16173 | NA | 0 |
| BRCA | TCGA-E9-A1NA-01A | TCGA-E9-A1NA | SLC37A1|PCP4 | SLC37A1 | PCP4 | 21 | 21 | 1 | 1 | 26 | 15 | 15 | 0.024 | 43988548 | 41300909 | tier1 | In-frame | 16174 | NA | 0 |
| LGG | TCGA-HT-7603-01A | TCGA-HT-7603 | PDE9A|DHRS7 | PDE9A | DHRS7 | 21 | 14 | 1 | -1 | 8 | 7 | 7 | 2.1 | 44153536 | 60622870 | tier1 | In-frame | 12520 | NA | 0.35714 |
| LUAD | TCGA-50-5941-01A | TCGA-50-5941 | PDE9A|ABCG1 | PDE9A | ABCG1 | 21 | 21 | 1 | 1 | 16 | 7 | 7 | 0.021 | 44073993 | 43645781 | tier1 | In-frame | 12519 | NA | 0.35672 |
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