Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUAD | TCGA-86-8358-01A | TCGA-86-8358 | C1QC|ARID1A | C1QC | ARID1A | 1 | 1 | 1 | 1 | 2 | 3 | 2 | 0.1 | 22974380 | 27099837 | tier4 | 3UTR-CDS | 2625 | NA | 0.36458 |
| LUSC | TCGA-37-3792-01A | TCGA-37-3792 | MORC3|FAM3B | MORC3 | FAM3B | 21 | 21 | 1 | 1 | 13 | 2 | 2 | 0.17 | 37744829 | 42710305 | tier1 | Out-of-frame | 10576 | NA | 0.34258 |
| BLCA | TCGA-K4-A3WV-01A | TCGA-K4-A3WV | MORC3|DOPEY2 | MORC3 | DOPEY2 | 21 | 21 | 1 | 1 | 37 | 17 | 17 | 4.1 | 37717329 | 37642311 | tier1 | In-frame | 10575 | NA | 0.34563 |
| BRCA | TCGA-E2-A158-01A | TCGA-E2-A158 | HLCS|CD53 | HLCS | CD53 | 21 | 1 | -1 | 1 | 2 | 2 | 2 | 0.34 | 38308749 | 111434014 | tier2 | CDS-5UTR | 7838 | NA | 0.3584 |
| LUAD | TCGA-50-5944-01A | TCGA-50-5944 | HLCS|GRIK1 | HLCS | GRIK1 | 21 | 21 | -1 | -1 | 2 | 5 | 2 | 0.84 | 38269160 | 30971257 | tier2 | Out-of-frame | 7839 | NA | 0.36226 |
| CESC | TCGA-C5-A7CJ-01A | TCGA-C5-A7CJ | HLCS|TSPEAR | HLCS | TSPEAR | 21 | 21 | -1 | -1 | 2 | 4 | 3 | 0.91 | 38269160 | 45987889 | tier2 | Out-of-frame | 7841 | NA | 0.33379 |
| LGG | TCGA-DU-7010-01A | TCGA-DU-7010 | HLCS|YBEY | HLCS | YBEY | 21 | 21 | -1 | 1 | 17 | 9 | 9 | 0.81 | 38302551 | 47711248 | tier1 | In-frame | 7842 | NA | 0.33379 |
| LUAD | TCGA-MN-A4N1-01A | TCGA-MN-A4N1 | HLCS|STRA8 | HLCS | STRA8 | 21 | 7 | -1 | 1 | 9 | 2 | 2 | 0.23 | 38269160 | 134925271 | tier2 | Out-of-frame | 7840 | NA | 0.33938 |
| MESO | TCGA-UT-A88E-01B | TCGA-UT-A88E | C1R|COL6A1 | C1R | COL6A1 | 12 | 21 | -1 | 1 | 2 | 59 | 1 | 0.03 | 7241206 | 47412277 | tier4 | Out-of-frame | 2629 | NA | 0.3713 |
| STAD | TCGA-CG-4477-01A | TCGA-CG-4477 | RSPRY1|OGFOD1 | RSPRY1 | OGFOD1 | 16 | 16 | 1 | 1 | 3 | 2 | 2 | 0.39 | 57220962 | 56500064 | tier1 | 5UTR-CDS | 15157 | NA | 0 |
| PRAD | TCGA-V1-A9O5-06A | TCGA-V1-A9O5 | SPON2|PARP1 | SPON2 | PARP1 | 4 | 1 | -1 | -1 | 2 | 88 | 34 | 3.2 | 1160725 | 224102800 | tier4 | NA | 16750 | NA | 0 |
| LIHC | TCGA-G3-A3CK-01A | TCGA-G3-A3CK | SPON2|CTBP1 | SPON2 | CTBP1 | 4 | 4 | -1 | -1 | 2 | 1 | 1 | 0.081 | 1195057 | 1235307 | tier3 | NA | 16746 | non-validated | 0 |
| LIHC | TCGA-ZS-A9CE-01A | TCGA-ZS-A9CE | SPON2|CTBP1 | SPON2 | CTBP1 | 4 | 4 | -1 | -1 | 3 | 1 | 1 | 0.081 | 1198770 | 1235307 | tier4 | NA | 16748 | NA | 0 |
| PRAD | TCGA-KK-A8I4-01A | TCGA-KK-A8I4 | SPON2|CTBP1 | SPON2 | CTBP1 | 4 | 4 | -1 | -1 | 2 | 4 | 2 | 0.081 | 1202364 | 1235307 | tier4 | NA | 16747 | NA | 0 |
| PRAD | TCGA-YL-A8HM-01A | TCGA-YL-A8HM | SPON2|HS1BP3 | SPON2 | HS1BP3 | 4 | 2 | -1 | -1 | 2 | 7 | 1 | 0.002 | 1160725 | 20822079 | tier4 | NA | 16749 | NA | 0 |
| MESO | TCGA-YS-AA4M-01A | TCGA-YS-AA4M | ATP6V0D1|CFDP1 | ATP6V0D1 | CFDP1 | 16 | 16 | -1 | -1 | 8 | 3 | 2 | 0.94 | 67514860 | 75339080 | tier1 | Out-of-frame | 1751 | NA | 0.36 |
| SKCM | TCGA-EB-A3Y7-01A | TCGA-EB-A3Y7 | ATP6V0D1|DUS2L | ATP6V0D1 | DUS2L | 16 | 16 | -1 | 1 | 85 | 29 | 26 | 0.42 | 67514860 | 68104037 | tier1 | Out-of-frame | 1752 | NA | 0.34653 |
| BRCA | TCGA-D8-A1XO-01A | TCGA-D8-A1XO | RGS12|USP2 | RGS12 | USP2 | 4 | 11 | 1 | -1 | 6 | 1 | 1 | 0.24 | 3344780 | 119230944 | tier2 | In-frame | 14635 | NA | 0 |
| UCEC | TCGA-E6-A8L9-01A | TCGA-E6-A8L9 | RGS12|PDZRN3 | RGS12 | PDZRN3 | 4 | 3 | 1 | -1 | 5 | 3 | 3 | 0.95 | 3319778 | 73657835 | tier1 | In-frame | 14634 | NA | 0 |
| CESC | TCGA-VS-A94X-01A | TCGA-VS-A94X | PSKH1|TSNAXIP1 | PSKH1 | TSNAXIP1 | 16 | 16 | 1 | 1 | 21 | 3 | 3 | 0.086 | 67943609 | 67858486 | tier1 | Out-of-frame | 13702 | NA | 0.36647 |
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