TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
PRAD	TCGA-HC-7212-01A	TCGA-HC-7212	SLC45A3\|FOXP1	SLC45A3	FOXP1	1	3	-1	-1	2	4	1	0.85	205626979	71007472	tier4	NA	16257	NA	0
PRAD	TCGA-KK-A8IL-01A	TCGA-KK-A8IL	SLC45A3\|SKIL	SLC45A3	SKIL	1	3	-1	1	48	15	15	6.1	205649522	170077487	tier1	5UTR-5UTR	16259	NA	0
PRAD	TCGA-FC-A5OB-01A	TCGA-FC-A5OB	SLC45A3\|ZBTB7B	SLC45A3	ZBTB7B	1	1	-1	1	123	121	98	0.43	205649522	154987131	tier1	5UTR-5UTR	16263	NA	0
PRAD	TCGA-HC-8260-01A	TCGA-HC-8260	SLC45A3\|ZNFX1	SLC45A3	ZNFX1	1	20	-1	-1	2	29	9	0.021	205626979	47863418	tier4	3UTR-CDS	16264	NA	0
PAAD	TCGA-HZ-7924-01A	TCGA-HZ-7924	NBL1\|STAT6	NBL1	STAT6	1	12	1	-1	2	19	15	0.026	19984945	57496773	tier4	NA	11130	NA	0.37454
ESCA	TCGA-JY-A93F-01A	TCGA-JY-A93F	NBL1\|C1orf151	NBL1	C1orf151	1	1	1	1	8	18	18	1	19970940	19948594	tier1	5UTR-CDS	11129	NA	0
CESC	TCGA-C5-A7CO-01A	TCGA-C5-A7CO	F11R\|USF1	F11R	USF1	1	1	-1	-1	5	2	2	1	160990800	161013150	tier1	CDS-5UTR	5969	NA	0.38181
LUAD	TCGA-78-7146-01A	TCGA-78-7146	F11R\|NOS1AP	F11R	NOS1AP	1	1	-1	1	69	55	48	0.27	160990800	162324977	tier1	In-frame	5968	non-validated	0.37841
LIHC	TCGA-ED-A82E-01A	TCGA-ED-A82E	EDA\|FAAH2	EDA	FAAH2	X	X	1	1	23	24	23	0.37	68836548	57318931	tier1	In-frame	5266	NA	0.35655
SARC	TCGA-DX-A3M1-01A	TCGA-DX-A3M1	EDA\|TEX11	EDA	TEX11	X	X	1	-1	21	18	13	0.59	68836548	70093157	tier1	In-frame	5267	validated	0.36316
LIHC	TCGA-G3-A3CH-01A	TCGA-G3-A3CH	APOA2\|TYK2	APOA2	TYK2	1	19	-1	-1	2	235	125	0.071	161192082	10491352	tier4	3UTR-5UTR	1134	NA	0.37537
LIHC	TCGA-2Y-A9HA-01A	TCGA-2Y-A9HA	APOA2\|ITPR2	APOA2	ITPR2	1	12	-1	-1	2	2	1	2.1	161192082	26775338	tier4	3UTR-CDS	1132	NA	0.36636
LIHC	TCGA-BC-A69I-01A	TCGA-BC-A69I	APOA2\|ITPR2	APOA2	ITPR2	1	12	-1	-1	2	1	1	2.1	161192082	26775338	tier3	3UTR-CDS	1133	NA	0.36636
OV	TCGA-23-1027-01A	TCGA-23-1027	CACHD1\|ROR1	CACHD1	ROR1	1	1	1	1	5	4	4	1.1	64936625	64624664	tier1	Out-of-frame	2850	NA	0.35934
BRCA	TCGA-BH-A1FC-01A	TCGA-BH-A1FC	CACHD1\|CLIC4	CACHD1	CLIC4	1	1	1	1	10	9	7	0.82	64936625	25124233	tier2	In-frame	2849	validated	0.36113
SARC	TCGA-DX-AB3A-01A	TCGA-DX-AB3A	CACHD1\|USP32	CACHD1	USP32	1	17	1	-1	6	4	4	1.3	65107652	58422969	tier1	In-frame	2851	NA	0.35687
LGG	TCGA-HT-7603-01A	TCGA-HT-7603	SYNJ1\|PDE9A	SYNJ1	PDE9A	21	21	-1	1	12	7	7	0.15	34099083	44163886	tier1	In-frame	17253	NA	0
BRCA	TCGA-E2-A158-01A	TCGA-E2-A158	SYNJ1\|C21orf62	SYNJ1	C21orf62	21	21	-1	-1	2	1	1	0.28	34037223	34182964	tier2	CDS-5UTR	17252	NA	0
PAAD	TCGA-L1-A7W4-01A	TCGA-L1-A7W4	IFNGR2\|NUDCD3	IFNGR2	NUDCD3	21	7	1	-1	142	164	146	0.032	34805178	44444182	tier1	In-frame	8064	NA	0.37266
LUSC	TCGA-37-4130-01A	TCGA-37-4130	GART\|PCP4	GART	PCP4	21	21	-1	1	4	5	5	0.081	34883559	41300909	tier1	In-frame	6954	NA	0.35087

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