Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-G9-7522-01A | TCGA-G9-7522 | SLC45A3|ERG | SLC45A3 | ERG | 1 | 21 | -1 | -1 | 166 | 119 | 116 | 0.6 | 205649522 | 39817544 | tier1 | 5UTR-CDS | 16240 | non-validated | 0 |
| PRAD | TCGA-HC-7748-01A | TCGA-HC-7748 | SLC45A3|ERG | SLC45A3 | ERG | 1 | 21 | -1 | -1 | 260 | 280 | 245 | 0.6 | 205649522 | 39817544 | tier1 | 5UTR-CDS | 16241 | NA | 0 |
| PRAD | TCGA-HC-7752-01A | TCGA-HC-7752 | SLC45A3|ERG | SLC45A3 | ERG | 1 | 21 | -1 | -1 | 2 | 1 | 1 | 0.6 | 205649522 | 39817544 | tier4 | 5UTR-CDS | 16242 | NA | 0 |
| PRAD | TCGA-HC-7820-01A | TCGA-HC-7820 | SLC45A3|ERG | SLC45A3 | ERG | 1 | 21 | -1 | -1 | 137 | 116 | 108 | 0.6 | 205649522 | 39817544 | tier1 | 5UTR-CDS | 16243 | NA | 0 |
| PRAD | TCGA-HC-7821-01A | TCGA-HC-7821 | SLC45A3|ERG | SLC45A3 | ERG | 1 | 21 | -1 | -1 | 124 | 88 | 86 | 0.6 | 205649522 | 39817544 | tier1 | 5UTR-CDS | 16244 | NA | 0 |
| PRAD | TCGA-HC-A6AN-01A | TCGA-HC-A6AN | SLC45A3|ERG | SLC45A3 | ERG | 1 | 21 | -1 | -1 | 151 | 89 | 83 | 0.6 | 205649522 | 39817544 | tier1 | 5UTR-CDS | 16245 | NA | 0 |
| PRAD | TCGA-J4-A83N-01A | TCGA-J4-A83N | SLC45A3|ERG | SLC45A3 | ERG | 1 | 21 | -1 | -1 | 155 | 117 | 113 | 0.6 | 205649522 | 39817544 | tier1 | 5UTR-CDS | 16246 | NA | 0 |
| PRAD | TCGA-KK-A8I5-01A | TCGA-KK-A8I5 | SLC45A3|ERG | SLC45A3 | ERG | 1 | 21 | -1 | -1 | 80 | 78 | 70 | 0.6 | 205649522 | 39817544 | tier1 | 5UTR-CDS | 16247 | NA | 0 |
| PRAD | TCGA-XJ-A9DQ-01A | TCGA-XJ-A9DQ | SLC45A3|ERG | SLC45A3 | ERG | 1 | 21 | -1 | -1 | 70 | 25 | 24 | 0.6 | 205649522 | 39817544 | tier1 | 5UTR-CDS | 16248 | NA | 0 |
| PRAD | TCGA-YL-A9WX-01A | TCGA-YL-A9WX | SLC45A3|ERG | SLC45A3 | ERG | 1 | 21 | -1 | -1 | 12 | 4 | 4 | 0.6 | 205649522 | 39817544 | tier4 | 5UTR-CDS | 16249 | NA | 0 |
| PRAD | TCGA-CH-5752-01A | TCGA-CH-5752 | SLC45A3|STAT6 | SLC45A3 | STAT6 | 1 | 12 | -1 | -1 | 2 | 5 | 4 | 0.039 | 205626979 | 57496773 | tier3 | NA | 16260 | NA | 0 |
| PRAD | TCGA-EJ-5497-01A | TCGA-EJ-5497 | SLC45A3|STAT6 | SLC45A3 | STAT6 | 1 | 12 | -1 | -1 | 2 | 15 | 12 | 0.039 | 205626979 | 57496773 | tier3 | NA | 16261 | NA | 0 |
| PRAD | TCGA-HC-8258-01A | TCGA-HC-8258 | SLC45A3|STAT6 | SLC45A3 | STAT6 | 1 | 12 | -1 | -1 | 2 | 5 | 1 | 0.039 | 205626979 | 57496773 | tier3 | NA | 16262 | NA | 0 |
| PRAD | TCGA-CH-5768-01A | TCGA-CH-5768 | SLC45A3|AP1G2 | SLC45A3 | AP1G2 | 1 | 14 | -1 | -1 | 2 | 20 | 17 | 0.11 | 205626979 | 24037279 | tier3 | 3UTR-5UTR | 16237 | NA | 0 |
| PRAD | TCGA-2A-A8W3-01A | TCGA-2A-A8W3 | SLC45A3|ETV1 | SLC45A3 | ETV1 | 1 | 7 | -1 | -1 | 622 | 577 | 527 | 0.8 | 205649522 | 13978871 | tier1 | 5UTR-CDS | 16250 | NA | 0 |
| PRAD | TCGA-HC-A6AQ-01A | TCGA-HC-A6AQ | SLC45A3|ETV1 | SLC45A3 | ETV1 | 1 | 7 | -1 | -1 | 23 | 20 | 19 | 0.8 | 205649522 | 13978871 | tier1 | 5UTR-CDS | 16251 | NA | 0 |
| PRAD | TCGA-HC-A8CY-01A | TCGA-HC-A8CY | SLC45A3|ETV1 | SLC45A3 | ETV1 | 1 | 7 | -1 | -1 | 446 | 554 | 509 | 0.8 | 205649522 | 13978871 | tier1 | 5UTR-CDS | 16252 | NA | 0 |
| PRAD | TCGA-J4-A83M-01A | TCGA-J4-A83M | SLC45A3|ETV1 | SLC45A3 | ETV1 | 1 | 7 | -1 | -1 | 314 | 339 | 301 | 0.8 | 205649522 | 14017105 | tier1 | 5UTR-CDS | 16253 | NA | 0 |
| PRAD | TCGA-KK-A7AP-01A | TCGA-KK-A7AP | SLC45A3|ETV1 | SLC45A3 | ETV1 | 1 | 7 | -1 | -1 | 481 | 478 | 437 | 0.8 | 205649522 | 13978871 | tier1 | 5UTR-CDS | 16254 | NA | 0 |
| PRAD | TCGA-M7-A71Y-01A | TCGA-M7-A71Y | SLC45A3|ETV1 | SLC45A3 | ETV1 | 1 | 7 | -1 | -1 | 101 | 78 | 66 | 0.8 | 205649522 | 13978871 | tier1 | 5UTR-CDS | 16255 | NA | 0 |
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