Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| THCA | TCGA-EL-A3T0-01A | TCGA-EL-A3T0 | BRAF|AP3B1 | BRAF | AP3B1 | 7 | 5 | -1 | -1 | 61 | 37 | 35 | 6.3 | 140494108 | 77335098 | tier1 | In-frame | 2177 | validated | 0.38762 |
| THCA | TCGA-FY-A40N-01A | TCGA-FY-A40N | BRAF|C7orf10 | BRAF | C7orf10 | 7 | 7 | -1 | 1 | 219 | 46 | 43 | 1.8 | 140624366 | 40789033 | tier1 | In-frame | 2179 | NA | 0 |
| THCA | TCGA-EM-A3AQ-01A | TCGA-EM-A3AQ | BRAF|CIITA | BRAF | CIITA | 7 | 16 | -1 | 1 | 4 | 3 | 2 | 0.069 | 140487348 | 10995371 | tier1 | In-frame | 2180 | validated | 0.39019 |
| THCA | TCGA-ET-A3BN-01A | TCGA-ET-A3BN | BRAF|FAM114A2 | BRAF | FAM114A2 | 7 | 5 | -1 | -1 | 78 | 42 | 38 | 0.032 | 140482821 | 153382529 | tier1 | In-frame | 2183 | NA | 0.38568 |
| THCA | TCGA-DE-A0Y2-01A | TCGA-DE-A0Y2 | BRAF|MACF1 | BRAF | MACF1 | 7 | 1 | -1 | 1 | 31 | 16 | 15 | 2.1 | 140494108 | 39898207 | tier1 | In-frame | 2185 | NA | 0.39015 |
| LUAD | TCGA-55-7727-01A | TCGA-55-7727 | SLC34A2|EEA1 | SLC34A2 | EEA1 | 4 | 12 | 1 | -1 | 2 | 4 | 2 | 0.42 | 25680370 | 93229203 | tier3 | NA | 16151 | NA | 0 |
| LUAD | TCGA-05-4405-01A | TCGA-05-4405 | SLC34A2|NDUFV1 | SLC34A2 | NDUFV1 | 4 | 11 | 1 | 1 | 2 | 5 | 1 | 0.81 | 25680370 | 67375697 | tier3 | NA | 16152 | NA | 0 |
| THCA | TCGA-FE-A231-01A | TCGA-FE-A231 | SLC34A2|CLDN7 | SLC34A2 | CLDN7 | 4 | 17 | 1 | -1 | 2 | 1 | 1 | 0.29 | 25680370 | 7166264 | tier3 | 3UTR-5UTR | 16149 | NA | 0 |
| THCA | TCGA-IM-A3U3-01A | TCGA-IM-A3U3 | SLC34A2|CLDN7 | SLC34A2 | CLDN7 | 4 | 17 | 1 | -1 | 2 | 2 | 2 | 0.29 | 25680370 | 7166264 | tier3 | 3UTR-5UTR | 16150 | NA | 0 |
| PRAD | TCGA-EJ-A7NN-01A | TCGA-EJ-A7NN | SLC37A3|FLYWCH2 | SLC37A3 | FLYWCH2 | 7 | 16 | -1 | 1 | 20 | 32 | 17 | 1.5 | 140043212 | 2945221 | tier1 | CDS-5UTR | 16175 | NA | 0 |
| COAD | TCGA-A6-6648-01A | TCGA-A6-6648 | TNFRSF14|TXLNA | TNFRSF14 | TXLNA | 1 | 1 | 1 | 1 | 14 | 5 | 3 | 0.025 | 2489907 | 32659666 | tier1 | Out-of-frame | 18339 | NA | 0 |
| LIHC | TCGA-DD-A3A4-01A | TCGA-DD-A3A4 | HPD|CYP2E1 | HPD | CYP2E1 | 12 | 10 | -1 | 1 | 44 | 1 | 1 | 1.6 | 122277436 | 135340867 | tier3 | 3UTR-5UTR | 7948 | NA | 0.35182 |
| LGG | TCGA-TM-A84H-01A | TCGA-TM-A84H | KCNB1|ZFPM2 | KCNB1 | ZFPM2 | 20 | 8 | -1 | 1 | 9 | 4 | 3 | 0.1 | 48098451 | 106431372 | tier1 | CDS-5UTR | 8569 | NA | 0.37171 |
| BRCA | TCGA-BH-A0H9-01A | TCGA-BH-A0H9 | NRG2|C5orf32 | NRG2 | C5orf32 | 5 | 5 | -1 | 1 | 16 | 26 | 26 | 0.61 | 139421955 | 139622890 | tier1 | In-frame | 11749 | NA | 0 |
| PRAD | TCGA-EJ-A46G-01A | TCGA-EJ-A46G | AHCYL2|SND1 | AHCYL2 | SND1 | 7 | 7 | 1 | 1 | 5 | 10 | 9 | 0.63 | 128865280 | 127714554 | tier1 | In-frame | 680 | NA | 0.3695 |
| COAD | TCGA-CM-4747-01A | TCGA-CM-4747 | AHCYL2|IP6K2 | AHCYL2 | IP6K2 | 7 | 3 | 1 | -1 | 2 | 3 | 3 | 1.4 | 129008392 | 48732854 | tier3 | CDS-5UTR | 679 | NA | 0.33719 |
| PRAD | TCGA-CH-5789-01A | TCGA-CH-5789 | SLC45A3|SIAE | SLC45A3 | SIAE | 1 | 11 | -1 | -1 | 2 | 8 | 4 | 0.055 | 205626979 | 124543777 | tier3 | 3UTR-5UTR | 16258 | NA | 0 |
| PRAD | TCGA-J4-A83I-01A | TCGA-J4-A83I | SLC45A3|FN1 | SLC45A3 | FN1 | 1 | 2 | -1 | -1 | 2 | 4 | 2 | 0.087 | 205626979 | 216274837 | tier4 | 3UTR-CDS | 16256 | NA | 0 |
| PRAD | TCGA-EJ-A7NG-01A | TCGA-EJ-A7NG | SLC45A3|ERG | SLC45A3 | ERG | 1 | 21 | -1 | -1 | 8 | 1 | 1 | 0.6 | 205649522 | 39817544 | tier4 | 5UTR-CDS | 16238 | NA | 0 |
| PRAD | TCGA-G9-6351-01A | TCGA-G9-6351 | SLC45A3|ERG | SLC45A3 | ERG | 1 | 21 | -1 | -1 | 119 | 75 | 67 | 0.6 | 205649522 | 39817544 | tier1 | 5UTR-CDS | 16239 | NA | 0 |
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