Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-J4-A83I-01A | TCGA-J4-A83I | ERG|ZNRF3 | ERG | ZNRF3 | 21 | 22 | -1 | 1 | 2 | 1 | 1 | 0.1 | 39947586 | 29383064 | tier3 | In-frame | 5772 | NA | 0.37209 |
| BRCA | TCGA-B6-A0IJ-01A | TCGA-B6-A0IJ | TAB3|DMD | TAB3 | DMD | X | X | -1 | -1 | 11 | 7 | 7 | 0.075 | 30877604 | 31241238 | tier1 | Out-of-frame | 17292 | validated | 0 |
| SARC | TCGA-X6-A7WA-01A | TCGA-X6-A7WA | TAB3|DMD | TAB3 | DMD | X | X | -1 | -1 | 2 | 3 | 1 | 0.075 | 30870895 | 31366751 | tier3 | In-frame | 17293 | NA | 0 |
| LUAD | TCGA-49-AAR9-01A | TCGA-49-AAR9 | SLC38A10|KIAA0748 | SLC38A10 | KIAA0748 | 17 | 12 | -1 | -1 | 7 | 10 | 10 | 0.18 | 79268623 | 55359935 | tier1 | Out-of-frame | 16181 | NA | 0 |
| SARC | TCGA-DX-A1L2-01A | TCGA-DX-A1L2 | SLC38A10|TMEM207 | SLC38A10 | TMEM207 | 17 | 3 | -1 | -1 | 25 | 12 | 11 | 0.77 | 79244718 | 190147520 | tier1 | Out-of-frame | 16184 | validated | 0 |
| SKCM | TCGA-ER-A19W-06A | TCGA-ER-A19W | SLC38A10|NPLOC4 | SLC38A10 | NPLOC4 | 17 | 17 | -1 | -1 | 7 | 5 | 5 | 0.83 | 79263491 | 79589304 | tier1 | Out-of-frame | 16183 | NA | 0 |
| STAD | TCGA-MX-A663-01A | TCGA-MX-A663 | SLC38A10|C17orf101 | SLC38A10 | C17orf101 | 17 | 17 | -1 | -1 | 4 | 13 | 12 | 0.69 | 79225293 | 80369406 | tier1 | In-frame | 16180 | NA | 0 |
| STAD | TCGA-BR-8060-01A | TCGA-BR-8060 | SLC38A10|NPLOC4 | SLC38A10 | NPLOC4 | 17 | 17 | -1 | -1 | 13 | 32 | 24 | 0.83 | 79225293 | 79539114 | tier1 | Out-of-frame | 16182 | NA | 0 |
| UCEC | TCGA-BG-A3PP-01A | TCGA-BG-A3PP | SLC38A10|C17orf101 | SLC38A10 | C17orf101 | 17 | 17 | -1 | -1 | 18 | 21 | 21 | 0.69 | 79244718 | 80356195 | tier1 | In-frame | 16179 | NA | 0 |
| LUSC | TCGA-22-1002-01A | TCGA-22-1002 | BRAF|SLC26A4 | BRAF | SLC26A4 | 7 | 7 | -1 | 1 | 5 | 1 | 1 | 0.43 | 140534409 | 107323647 | tier3 | In-frame | 2188 | NA | 0.38622 |
| READ | TCGA-F5-6464-01A | TCGA-F5-6464 | BRAF|TRIM24 | BRAF | TRIM24 | 7 | 7 | -1 | 1 | 7 | 1 | 1 | 0.74 | 140624366 | 138258252 | tier3 | In-frame | 2190 | NA | 0.39399 |
| THCA | TCGA-EL-A3ZK-01A | TCGA-EL-A3ZK | BRAF|SND1 | BRAF | SND1 | 7 | 7 | -1 | 1 | 57 | 61 | 56 | 3.7 | 140487348 | 127724776 | tier1 | In-frame | 2189 | NA | 0.38949 |
| BLCA | TCGA-K4-A3WV-01A | TCGA-K4-A3WV | BRAF|MRPS33 | BRAF | MRPS33 | 7 | 7 | -1 | -1 | 36 | 8 | 7 | 0.26 | 140624366 | 140710460 | tier1 | CDS-5UTR | 2186 | NA | 0.38674 |
| KIRP | TCGA-5P-A9JZ-01A | TCGA-5P-A9JZ | BRAF|CUL1 | BRAF | CUL1 | 7 | 7 | -1 | 1 | 7 | 8 | 7 | 3.4 | 140549911 | 148427054 | tier1 | CDS-5UTR | 2181 | NA | 0.39212 |
| PAAD | TCGA-F2-A44H-01A | TCGA-F2-A44H | BRAF|CUX1 | BRAF | CUX1 | 7 | 7 | -1 | 1 | 2 | 2 | 2 | 1.2 | 140500162 | 101801840 | tier3 | In-frame | 2182 | NA | 0.39014 |
| SKCM | TCGA-DA-A1IA-06A | TCGA-DA-A1IA | BRAF|AGK | BRAF | AGK | 7 | 7 | -1 | 1 | 10 | 14 | 13 | 1.2 | 140500162 | 141292946 | tier1 | In-frame | 2175 | NA | 0.38527 |
| SKCM | TCGA-BF-A5EP-01A | TCGA-BF-A5EP | BRAF|ATG7 | BRAF | ATG7 | 7 | 3 | -1 | 1 | 84 | 95 | 87 | 0.44 | 140507760 | 11596285 | tier1 | In-frame | 2178 | NA | 0.38769 |
| SKCM | TCGA-BF-A5EP-01A | TCGA-BF-A5EP | BRAF|HIBADH | BRAF | HIBADH | 7 | 7 | -1 | -1 | 2 | 4 | 2 | 0.17 | 140500162 | 27582719 | tier3 | Out-of-frame | 2184 | NA | 0.38752 |
| STAD | TCGA-VQ-A8E2-01A | TCGA-VQ-A8E2 | BRAF|MRPS33 | BRAF | MRPS33 | 7 | 7 | -1 | -1 | 3 | 34 | 29 | 0.26 | 140624366 | 140710460 | tier1 | CDS-5UTR | 2187 | NA | 0.38674 |
| THCA | TCGA-DJ-A2PX-01A | TCGA-DJ-A2PX | BRAF|AGK | BRAF | AGK | 7 | 7 | -1 | 1 | 20 | 26 | 23 | 1.2 | 140500162 | 141292946 | tier1 | In-frame | 2176 | NA | 0.38527 |
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