Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUAD | TCGA-55-6987-01A | TCGA-55-6987 | LRP8|USP24 | LRP8 | USP24 | 1 | 1 | -1 | -1 | 7 | 5 | 5 | 0.012 | 53792545 | 55562845 | tier1 | Out-of-frame | 9553 | NA | 0.37562 |
| THCA | TCGA-BJ-A291-01A | TCGA-BJ-A291 | LRP8|PAX8 | LRP8 | PAX8 | 1 | 2 | -1 | -1 | 317 | 311 | 276 | 0.65 | 53723991 | 114004496 | tier1 | In-frame | 9550 | NA | 0.37567 |
| KICH | TCGA-KL-8339-01A | TCGA-KL-8339 | MMP14|RBM23 | MMP14 | RBM23 | 14 | 14 | 1 | -1 | 24 | 12 | 10 | 1.2 | 23306134 | 23371591 | tier1 | In-frame | 10545 | NA | 0.37133 |
| SARC | TCGA-IW-A3M6-01A | TCGA-IW-A3M6 | MMP14|CCT5 | MMP14 | CCT5 | 14 | 5 | 1 | 1 | 2 | 2 | 2 | 0.14 | 23316970 | 10250033 | tier3 | 3UTR-5UTR | 10544 | NA | 0.37158 |
| PRAD | TCGA-EJ-7781-01A | TCGA-EJ-7781 | DHRS4|MANBA | DHRS4 | MANBA | 14 | 4 | 1 | -1 | 4 | 1 | 1 | 100 | 24423125 | 103647840 | tier3 | Out-of-frame | 4787 | NA | 0.34436 |
| BLCA | TCGA-FD-A3B3-01A | TCGA-FD-A3B3 | DHRS4|SCFD1 | DHRS4 | SCFD1 | 14 | 14 | 1 | 1 | 5 | 2 | 2 | 0.38 | 24423125 | 31103153 | tier1 | In-frame | 4788 | NA | 0.36437 |
| ESCA | TCGA-L5-A4OJ-01A | TCGA-L5-A4OJ | ST3GAL2|COG4 | ST3GAL2 | COG4 | 16 | 16 | -1 | -1 | 5 | 24 | 18 | 0.54 | 70472852 | 70517872 | tier1 | 5UTR-CDS | 16932 | non-validated | 0 |
| OV | TCGA-13-1411-01A | TCGA-13-1411 | ST3GAL2|COG4 | ST3GAL2 | COG4 | 16 | 16 | -1 | -1 | 4 | 3 | 3 | 0.54 | 70422270 | 70534994 | tier1 | In-frame | 16931 | NA | 0 |
| LUAD | TCGA-49-4510-01A | TCGA-49-4510 | IL34|CNGB1 | IL34 | CNGB1 | 16 | 16 | 1 | -1 | 2 | 2 | 2 | 0.89 | 70613952 | 58001198 | tier2 | 5UTR-5UTR | 8193 | non-validated | 0.35738 |
| LUAD | TCGA-05-4402-01A | TCGA-05-4402 | IL34|ST3GAL2 | IL34 | ST3GAL2 | 16 | 16 | 1 | -1 | 3 | 3 | 3 | 0.34 | 70613952 | 70433436 | tier1 | 5UTR-5UTR | 8194 | NA | 0.34512 |
| KIRC | TCGA-B2-4098-01A | TCGA-B2-4098 | IL34|ARG2 | IL34 | ARG2 | 16 | 14 | 1 | 1 | 4 | 2 | 2 | 1.6 | 70613952 | 68087611 | tier1 | 5UTR-CDS | 8192 | NA | 0.3423 |
| LUSC | TCGA-39-5019-01A | TCGA-39-5019 | DHRS1|METTL3 | DHRS1 | METTL3 | 14 | 14 | -1 | -1 | 8 | 8 | 8 | 0.36 | 24768163 | 21970045 | tier1 | In-frame | 4784 | NA | 0.35331 |
| BRCA | TCGA-GM-A2DD-01A | TCGA-GM-A2DD | CACNA1D|PRKCD | CACNA1D | PRKCD | 3 | 3 | 1 | 1 | 3 | 2 | 2 | 0.22 | 53535747 | 53217468 | tier1 | In-frame | 2863 | NA | 0.38597 |
| ESCA | TCGA-L5-A4OS-01A | TCGA-L5-A4OS | CACNA1D|GNL3 | CACNA1D | GNL3 | 3 | 3 | 1 | 1 | 4 | 14 | 11 | 0.004 | 53804579 | 52724608 | tier1 | Out-of-frame | 2862 | NA | 0.36904 |
| LUSC | TCGA-85-8287-01A | TCGA-85-8287 | KIT|SLC4A4 | KIT | SLC4A4 | 4 | 4 | 1 | 1 | 25 | 8 | 8 | 0.12 | 55599358 | 72102293 | tier1 | CDS-5UTR | 9029 | NA | 0.38728 |
| SKCM | TCGA-EB-A44O-01A | TCGA-EB-A44O | KIT|UGT2B7 | KIT | UGT2B7 | 4 | 4 | 1 | 1 | 10 | 4 | 4 | 0.35 | 55524248 | 69955190 | tier1 | NA | 9030 | NA | 0.38644 |
| LGG | TCGA-S9-A89Z-01A | TCGA-S9-A89Z | KIT|HOPX | KIT | HOPX | 4 | 4 | 1 | -1 | 5 | 4 | 3 | 0.025 | 55524248 | 57522178 | tier1 | CDS-5UTR | 9028 | NA | 0.38944 |
| LUSC | TCGA-96-8169-01A | TCGA-96-8169 | KIT|DNAJB14 | KIT | DNAJB14 | 4 | 4 | 1 | -1 | 3 | 1 | 1 | 1.1 | 55598164 | 100851778 | tier2 | Out-of-frame | 9026 | NA | 0.38512 |
| SKCM | TCGA-FS-A1ZG-06A | TCGA-FS-A1ZG | KIT|FAR1 | KIT | FAR1 | 4 | 11 | 1 | 1 | 2 | 1 | 1 | 0.088 | 55606881 | 13744912 | tier3 | NA | 9027 | NA | 0.38865 |
| BRCA | TCGA-A2-A0CX-01A | TCGA-A2-A0CX | CACNA2D3|FOXP1 | CACNA2D3 | FOXP1 | 3 | 3 | 1 | -1 | 12 | 15 | 15 | 0.93 | 54798378 | 71050210 | tier1 | Out-of-frame | 2870 | NA | 0.35727 |
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