Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUAD | TCGA-05-4422-01A | TCGA-05-4422 | ATAD2|WDYHV1 | ATAD2 | WDYHV1 | 8 | 8 | -1 | 1 | 17 | 29 | 1 | 1 | 124392769 | 124440164 | tier2 | In-frame | 1581 | validated | 0.36133 |
| SARC | TCGA-DX-AB2V-01A | TCGA-DX-AB2V | ATAD2|WDYHV1 | ATAD2 | WDYHV1 | 8 | 8 | -1 | 1 | 4 | 1 | 1 | 1 | 124384877 | 124448693 | tier2 | Out-of-frame | 1583 | NA | 0.36133 |
| UCEC | TCGA-DF-A2KR-01A | TCGA-DF-A2KR | ATAD2|KHDRBS3 | ATAD2 | KHDRBS3 | 8 | 8 | -1 | 1 | 4 | 2 | 2 | 0.032 | 124346118 | 136533480 | tier1 | In-frame | 1577 | NA | 0.36366 |
| UCEC | TCGA-AX-A3GI-01A | TCGA-AX-A3GI | ATAD2|WDYHV1 | ATAD2 | WDYHV1 | 8 | 8 | -1 | 1 | 7 | 7 | 3 | 1 | 124408427 | 124440164 | tier1 | Out-of-frame | 1582 | NA | 0.36133 |
| LUSC | TCGA-77-7139-01A | TCGA-77-7139 | HIAT1|PALMD | HIAT1 | PALMD | 1 | 1 | 1 | 1 | 5 | 2 | 2 | 0.25 | 100535241 | 100127875 | tier1 | In-frame | 7747 | non-validated | 0.33905 |
| BRCA | TCGA-AO-A128-01A | TCGA-AO-A128 | BUB1B|EIF2AK4 | BUB1B | EIF2AK4 | 15 | 15 | 1 | 1 | 3 | 2 | 1 | 0.061 | 40468874 | 40301815 | tier3 | Out-of-frame | 2285 | NA | 0.37604 |
| BRCA | TCGA-D8-A1XT-01A | TCGA-D8-A1XT | BUB1B|EIF2AK4 | BUB1B | EIF2AK4 | 15 | 15 | 1 | 1 | 26 | 30 | 26 | 0.061 | 40453456 | 40314720 | tier1 | Out-of-frame | 2286 | NA | 0.37604 |
| BRCA | TCGA-OL-A66I-01A | TCGA-OL-A66I | BUB1B|EIF2AK4 | BUB1B | EIF2AK4 | 15 | 15 | 1 | 1 | 8 | 9 | 4 | 0.061 | 40453456 | 40321607 | tier4 | In-frame | 2288 | NA | 0.37604 |
| UCS | TCGA-N8-A56S-01A | TCGA-N8-A56S | BUB1B|EIF2AK4 | BUB1B | EIF2AK4 | 15 | 15 | 1 | 1 | 2 | 2 | 2 | 0.061 | 40510763 | 40278006 | tier2 | Out-of-frame | 2287 | NA | 0.37604 |
| LUSC | TCGA-O2-A5IB-01A | TCGA-O2-A5IB | BUB1B|PCM1 | BUB1B | PCM1 | 15 | 8 | 1 | 1 | 12 | 9 | 9 | 0.098 | 40462882 | 17842956 | tier1 | Out-of-frame | 2289 | NA | 0.37017 |
| UCEC | TCGA-PG-A915-01A | TCGA-PG-A915 | GHRL|SEC13 | GHRL | SEC13 | 3 | 3 | -1 | -1 | 93 | 69 | 64 | 0.98 | 10328388 | 10343058 | tier1 | Out-of-frame | 7056 | NA | 0.36719 |
| BRCA | TCGA-A2-A0EY-01A | TCGA-A2-A0EY | SMG1|ANO3 | SMG1 | ANO3 | 16 | 11 | -1 | 1 | 3 | 9 | 6 | 0.31 | 18869492 | 26669256 | tier1 | In-frame | 16413 | non-validated | 0 |
| PRAD | TCGA-XJ-A9DK-01A | TCGA-XJ-A9DK | SMG1|SNF8 | SMG1 | SNF8 | 16 | 17 | -1 | -1 | 7 | 14 | 14 | 1.3 | 18937272 | 47018424 | tier1 | Out-of-frame | 16414 | NA | 0 |
| BLCA | TCGA-CF-A3MI-01A | TCGA-CF-A3MI | NRG1|KRT78 | NRG1 | KRT78 | 8 | 12 | 1 | -1 | 2 | 5 | 5 | 0.081 | 32406344 | 53233768 | tier2 | Out-of-frame | 11745 | NA | 0.37941 |
| MESO | TCGA-TS-A7P1-01A | TCGA-TS-A7P1 | NRG1|PROSC | NRG1 | PROSC | 8 | 8 | 1 | 1 | 5 | 1 | 1 | 3.5 | 32406344 | 37630273 | tier2 | In-frame | 11747 | NA | 0.37951 |
| PRAD | TCGA-FC-A4JI-01A | TCGA-FC-A4JI | NRG1|STMN2 | NRG1 | STMN2 | 8 | 8 | 1 | 1 | 51 | 36 | 32 | 3 | 32463201 | 80549037 | tier1 | In-frame | 11748 | NA | 0.38026 |
| UCS | TCGA-ND-A4WA-01A | TCGA-ND-A4WA | NRG1|PMEPA1 | NRG1 | PMEPA1 | 8 | 20 | 1 | -1 | 19 | 9 | 8 | 0.54 | 31498245 | 56234753 | tier1 | In-frame | 11746 | NA | 0.3775 |
| LUAD | TCGA-NJ-A4YF-01A | TCGA-NJ-A4YF | CPT2|SCP2 | CPT2 | SCP2 | 1 | 1 | 1 | 1 | 9 | 2 | 2 | 0.035 | 53676991 | 53420412 | tier1 | In-frame | 4178 | NA | 0.35416 |
| BRCA | TCGA-A8-A08F-01A | TCGA-A8-A08F | LRP8|RAD51C | LRP8 | RAD51C | 1 | 17 | -1 | 1 | 33 | 17 | 17 | 0.21 | 53720789 | 56772292 | tier1 | In-frame | 9551 | NA | 0.37676 |
| BRCA | TCGA-AC-A6IW-01A | TCGA-AC-A6IW | LRP8|TMEM217 | LRP8 | TMEM217 | 1 | 6 | -1 | -1 | 7 | 14 | 13 | 0.24 | 53716362 | 37186817 | tier1 | CDS-5UTR | 9552 | NA | 0.37151 |
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