Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUSC | TCGA-85-7950-01A | TCGA-85-7950 | CXCL13|UTRN | CXCL13 | UTRN | 4 | 6 | 1 | 1 | 2 | 17 | 15 | 0.53 | 78532988 | 144665237 | tier3 | NA | 4474 | NA | 0.37634 |
| STAD | TCGA-VQ-AA6D-01A | TCGA-VQ-AA6D | HKDC1|SUPV3L1 | HKDC1 | SUPV3L1 | 10 | 10 | 1 | 1 | 2 | 9 | 8 | 0.33 | 71010408 | 70951411 | tier2 | In-frame | 7808 | NA | 0.34866 |
| BRCA | TCGA-BH-A0AV-01A | TCGA-BH-A0AV | NPTN|CLUAP1 | NPTN | CLUAP1 | 15 | 16 | -1 | 1 | 275 | 531 | 493 | 1.7 | 73879865 | 3580568 | tier2 | In-frame | 11707 | non-validated | 0.3477 |
| BLCA | TCGA-KQ-A41N-01A | TCGA-KQ-A41N | KAT6B|ADK | KAT6B | ADK | 10 | 10 | 1 | 1 | 5 | 3 | 2 | 0.61 | 76603236 | 76349040 | tier1 | In-frame | 8542 | NA | 0.3377 |
| BRCA | TCGA-C8-A12Q-01A | TCGA-C8-A12Q | KAT6B|ADK | KAT6B | ADK | 10 | 10 | 1 | 1 | 47 | 32 | 31 | 0.61 | 76603236 | 76429941 | tier1 | Out-of-frame | 8540 | non-validated | 0.3377 |
| BRCA | TCGA-E2-A574-01A | TCGA-E2-A574 | KAT6B|ADK | KAT6B | ADK | 10 | 10 | 1 | 1 | 22 | 15 | 13 | 0.61 | 76603236 | 76349040 | tier1 | In-frame | 8541 | NA | 0.3377 |
| LUAD | TCGA-05-4420-01A | TCGA-05-4420 | KAT6B|ADK | KAT6B | ADK | 10 | 10 | 1 | 1 | 4 | 5 | 5 | 0.61 | 76603236 | 76429941 | tier1 | Out-of-frame | 8537 | non-validated | 0.3377 |
| OV | TCGA-13-1495-01A | TCGA-13-1495 | KAT6B|ADK | KAT6B | ADK | 10 | 10 | 1 | 1 | 11 | 12 | 11 | 0.61 | 76603236 | 76468079 | tier1 | Out-of-frame | 8538 | NA | 0.3377 |
| OV | TCGA-24-1553-01A | TCGA-24-1553 | KAT6B|ADK | KAT6B | ADK | 10 | 10 | 1 | 1 | 7 | 7 | 7 | 0.61 | 76603236 | 76349040 | tier1 | In-frame | 8539 | NA | 0.3377 |
| BRCA | TCGA-AQ-A04L-01B | TCGA-AQ-A04L | KAT6B|C10orf96 | KAT6B | C10orf96 | 10 | 10 | 1 | 1 | 375 | 248 | 214 | 0.5 | 76741686 | 118100246 | tier1 | In-frame | 8543 | NA | 0 |
| BRCA | TCGA-E9-A228-01A | TCGA-E9-A228 | KAT6B|DDX4 | KAT6B | DDX4 | 10 | 5 | 1 | 1 | 8 | 11 | 9 | 0.07 | 76748870 | 55034778 | tier1 | CDS-5UTR | 8545 | NA | 0.34582 |
| BRCA | TCGA-A2-A25B-01A | TCGA-A2-A25B | KAT6B|RTKN2 | KAT6B | RTKN2 | 10 | 10 | 1 | -1 | 2 | 4 | 4 | 0.046 | 76785007 | 64000954 | tier4 | In-frame | 8547 | non-validated | 0.34123 |
| PRAD | TCGA-YL-A8HL-01A | TCGA-YL-A8HL | KAT6B|CORO7 | KAT6B | CORO7 | 10 | 16 | 1 | -1 | 13 | 2 | 2 | 0.3 | 76785007 | 4445340 | tier1 | Out-of-frame | 8544 | NA | 0.35016 |
| PRAD | TCGA-VP-A875-01A | TCGA-VP-A875 | KAT6B|SH3BP5L | KAT6B | SH3BP5L | 10 | 1 | 1 | -1 | 7 | 9 | 9 | 0.33 | 76603236 | 249119565 | tier1 | CDS-5UTR | 8548 | NA | 0.34375 |
| SARC | TCGA-HS-A5N8-01A | TCGA-HS-A5N8 | KAT6B|KIAA1267 | KAT6B | KIAA1267 | 10 | 17 | 1 | -1 | 19 | 10 | 8 | 1.6 | 76603236 | 44111651 | tier1 | In-frame | 8546 | NA | 0.34949 |
| HNSC | TCGA-CV-6935-01A | TCGA-CV-6935 | ATAD2|ERBB4 | ATAD2 | ERBB4 | 8 | 2 | -1 | -1 | 20 | 10 | 10 | 0.016 | 124381298 | 212530202 | tier1 | Out-of-frame | 1575 | NA | 0.38594 |
| BRCA | TCGA-BH-A203-01A | TCGA-BH-A203 | ATAD2|FAM178B | ATAD2 | FAM178B | 8 | 2 | -1 | -1 | 2 | 4 | 3 | 2 | 124346118 | 97595057 | tier3 | In-frame | 1576 | NA | 0.35357 |
| BRCA | TCGA-E9-A243-01A | TCGA-E9-A243 | ATAD2|PODXL | ATAD2 | PODXL | 8 | 7 | -1 | -1 | 26 | 18 | 16 | 0.34 | 124351551 | 131196192 | tier1 | In-frame | 1579 | NA | 0.36348 |
| BRCA | TCGA-OL-A66I-01A | TCGA-OL-A66I | ATAD2|RAD51B | ATAD2 | RAD51B | 8 | 14 | -1 | 1 | 6 | 1 | 1 | 0.042 | 124381298 | 68758601 | tier2 | Out-of-frame | 1580 | NA | 0.34436 |
| LUAD | TCGA-93-A4JQ-01A | TCGA-93-A4JQ | ATAD2|LRP12 | ATAD2 | LRP12 | 8 | 8 | -1 | -1 | 7 | 17 | 16 | 0.005 | 124408427 | 105521302 | tier1 | Out-of-frame | 1578 | NA | 0.3681 |
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