Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LIHC | TCGA-BC-A217-01A | TCGA-BC-A217 | UGT2B4|MTHFD2L | UGT2B4 | MTHFD2L | 4 | 4 | -1 | 1 | 204 | 109 | 96 | 0.61 | 70355157 | 75025772 | tier1 | CDS-5UTR | 19201 | validated | 0 |
| KIRP | TCGA-P4-AAVO-01A | TCGA-P4-AAVO | ADK|SIRT1 | ADK | SIRT1 | 10 | 10 | 1 | 1 | 3 | 2 | 1 | 0.087 | 75911101 | 69676022 | tier2 | Out-of-frame | 520 | NA | 0.36797 |
| BRCA | TCGA-AN-A0AJ-01A | TCGA-AN-A0AJ | ADK|KCNMA1 | ADK | KCNMA1 | 10 | 10 | 1 | -1 | 8 | 12 | 12 | 1.8 | 76074503 | 79011014 | tier1 | In-frame | 516 | NA | 0.36559 |
| PRAD | TCGA-KK-A8IH-01A | TCGA-KK-A8IH | ADK|KCNMA1 | ADK | KCNMA1 | 10 | 10 | 1 | -1 | 2 | 4 | 4 | 1.8 | 75984349 | 78778857 | tier2 | In-frame | 517 | NA | 0.36559 |
| BRCA | TCGA-BH-A18U-01A | TCGA-BH-A18U | ADK|LRRTM3 | ADK | LRRTM3 | 10 | 10 | 1 | 1 | 11 | 2 | 2 | 0.91 | 76430027 | 68857345 | tier1 | Out-of-frame | 518 | validated | 0.34772 |
| BRCA | TCGA-BH-A1EY-01A | TCGA-BH-A1EY | ADK|RP11-548K23.11 | ADK | RP11-548K23.11 | 10 | 10 | 1 | 1 | 12 | 1 | 1 | 1.7 | 75960596 | 99416042 | tier2 | Out-of-frame | 519 | NA | 0.3377 |
| BRCA | TCGA-D8-A1JI-01A | TCGA-D8-A1JI | ADK|SPTAN1 | ADK | SPTAN1 | 10 | 9 | 1 | 1 | 5 | 1 | 1 | 0.58 | 75984349 | 131329017 | tier2 | CDS-5UTR | 521 | NA | 0.38021 |
| BRCA | TCGA-AO-A03P-01A | TCGA-AO-A03P | ADK|TTC23 | ADK | TTC23 | 10 | 15 | 1 | -1 | 27 | 23 | 21 | 1 | 75936644 | 99768937 | tier1 | CDS-5UTR | 522 | NA | 0.34278 |
| OV | TCGA-24-1426-01A | TCGA-24-1426 | ADK|FAM149B1 | ADK | FAM149B1 | 10 | 10 | 1 | 1 | 2 | 4 | 3 | 0.033 | 75936644 | 74987818 | tier2 | Out-of-frame | 515 | NA | 0.34489 |
| SARC | TCGA-WK-A8XX-01A | TCGA-WK-A8XX | ADK|C10orf11 | ADK | C10orf11 | 10 | 10 | 1 | 1 | 2 | 1 | 1 | 100 | 75984349 | 77795766 | tier3 | In-frame | 514 | NA | 0 |
| UCEC | TCGA-D1-A3JQ-01A | TCGA-D1-A3JQ | ADK|C10orf11 | ADK | C10orf11 | 10 | 10 | 1 | 1 | 46 | 44 | 34 | 100 | 76430027 | 78316967 | tier1 | In-frame | 513 | NA | 0 |
| BRCA | TCGA-A2-A25D-01A | TCGA-A2-A25D | KCNMA1|MSMB | KCNMA1 | MSMB | 10 | 10 | -1 | 1 | 3 | 4 | 4 | 1.6 | 78869931 | 51555731 | tier1 | In-frame | 8588 | NA | 0.36414 |
| BRCA | TCGA-C8-A135-01A | TCGA-C8-A135 | KCNMA1|DLG5 | KCNMA1 | DLG5 | 10 | 10 | -1 | -1 | 2 | 5 | 5 | 0.52 | 79163620 | 79552301 | tier3 | Out-of-frame | 8583 | NA | 0.37922 |
| BRCA | TCGA-EW-A1OV-01A | TCGA-EW-A1OV | KCNMA1|ECD | KCNMA1 | ECD | 10 | 10 | -1 | -1 | 10 | 4 | 2 | 0.22 | 78943179 | 74923708 | tier1 | CDS-5UTR | 8585 | NA | 0.36896 |
| BRCA | TCGA-E2-A106-01A | TCGA-E2-A106 | KCNMA1|RFX2 | KCNMA1 | RFX2 | 10 | 19 | -1 | -1 | 4 | 2 | 2 | 0.002 | 79397023 | 6047515 | tier1 | CDS-5UTR | 8589 | NA | 0.37118 |
| LIHC | TCGA-CC-A7IJ-01A | TCGA-CC-A7IJ | KCNMA1|DOCK1 | KCNMA1 | DOCK1 | 10 | 10 | -1 | 1 | 7 | 4 | 3 | 0.14 | 78880731 | 129249596 | tier1 | Out-of-frame | 8584 | NA | 0.3785 |
| OV | TCGA-24-1553-01A | TCGA-24-1553 | KCNMA1|DLG5 | KCNMA1 | DLG5 | 10 | 10 | -1 | -1 | 9 | 12 | 12 | 0.52 | 79397023 | 79584234 | tier1 | In-frame | 8582 | NA | 0.37922 |
| PCPG | TCGA-RW-A688-01A | TCGA-RW-A688 | KCNMA1|HIVEP3 | KCNMA1 | HIVEP3 | 10 | 1 | -1 | -1 | 7 | 4 | 4 | 0.25 | 78943179 | 41984159 | tier1 | In-frame | 8587 | NA | 0.37758 |
| PRAD | TCGA-HC-7209-01A | TCGA-HC-7209 | KCNMA1|FARP1 | KCNMA1 | FARP1 | 10 | 13 | -1 | 1 | 34 | 31 | 29 | 0.008 | 79397023 | 98865474 | tier1 | CDS-5UTR | 8586 | NA | 0.36875 |
| BRCA | TCGA-BH-A1F2-01A | TCGA-BH-A1F2 | DCK|GRSF1 | DCK | GRSF1 | 4 | 4 | 1 | -1 | 40 | 16 | 14 | 0.18 | 71863899 | 71702031 | tier1 | In-frame | 4600 | NA | 0.35726 |
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