Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUSC | TCGA-85-8071-01A | TCGA-85-8071 | CHST9|DLGAP3 | CHST9 | DLGAP3 | 18 | 1 | -1 | -1 | 11 | 14 | 14 | 0.31 | 24604080 | 35373038 | tier2 | CDS-5UTR | 3718 | NA | 0.36011 |
| LUSC | TCGA-70-6723-01A | TCGA-70-6723 | CHST9|ZNF675 | CHST9 | ZNF675 | 18 | 19 | -1 | -1 | 5 | 2 | 2 | 0.61 | 24722653 | 23845960 | tier1 | Out-of-frame | 3719 | NA | 0.36442 |
| SARC | TCGA-DX-AB2E-01A | TCGA-DX-AB2E | ANGPT1|TNFRSF11B | ANGPT1 | TNFRSF11B | 8 | 8 | -1 | -1 | 88 | 50 | 45 | 0.37 | 108509490 | 119945539 | tier2 | In-frame | 894 | NA | 0.37292 |
| LIHC | TCGA-DD-AADC-01A | TCGA-DD-AADC | PRKCA|RPS6KB1 | PRKCA | RPS6KB1 | 17 | 17 | 1 | 1 | 14 | 6 | 5 | 1.1 | 64683385 | 57987923 | tier1 | Out-of-frame | 13551 | NA | 0.38901 |
| SARC | TCGA-HS-A5N9-01A | TCGA-HS-A5N9 | PRKCA|PI4KA | PRKCA | PI4KA | 17 | 22 | 1 | -1 | 2 | 1 | 1 | 0.032 | 64302245 | 21161746 | tier3 | Out-of-frame | 13544 | NA | 0.38383 |
| BLCA | TCGA-4Z-AA86-01A | TCGA-4Z-AA86 | PRKCA|NF1 | PRKCA | NF1 | 17 | 17 | 1 | 1 | 7 | 5 | 5 | 0.72 | 64302245 | 29652838 | tier1 | Out-of-frame | 13543 | NA | 0.38806 |
| BRCA | TCGA-AC-A5XU-01A | TCGA-AC-A5XU | PRKCA|CDH8 | PRKCA | CDH8 | 17 | 16 | 1 | -1 | 3 | 2 | 2 | 0.29 | 64685165 | 61935377 | tier1 | In-frame | 13538 | NA | 0.3844 |
| BRCA | TCGA-A2-A1FW-01A | TCGA-A2-A1FW | PRKCA|CRYBA1 | PRKCA | CRYBA1 | 17 | 17 | 1 | 1 | 3 | 2 | 2 | 100 | 64302245 | 27576160 | tier1 | In-frame | 13540 | NA | 0.38283 |
| BRCA | TCGA-AC-A6IV-01A | TCGA-AC-A6IV | PRKCA|IGF2BP1 | PRKCA | IGF2BP1 | 17 | 17 | 1 | 1 | 3 | 1 | 1 | 0.48 | 64302245 | 47126714 | tier2 | Out-of-frame | 13541 | NA | 0.38301 |
| BRCA | TCGA-3C-AALI-01A | TCGA-3C-AALI | PRKCA|RGS9 | PRKCA | RGS9 | 17 | 17 | 1 | 1 | 57 | 27 | 27 | 6.2 | 64637584 | 63221120 | tier1 | Out-of-frame | 13549 | NA | 0.38365 |
| BRCA | TCGA-A2-A0YE-01A | TCGA-A2-A0YE | PRKCA|ST6GALNAC2 | PRKCA | ST6GALNAC2 | 17 | 17 | 1 | -1 | 8 | 6 | 6 | 1.5 | 64492401 | 74574898 | tier1 | Out-of-frame | 13553 | NA | 0.38195 |
| COAD | TCGA-AY-A8YK-01A | TCGA-AY-A8YK | PRKCA|TMEM100 | PRKCA | TMEM100 | 17 | 17 | 1 | -1 | 5 | 10 | 10 | 0.45 | 64492401 | 53805343 | tier1 | CDS-5UTR | 13554 | NA | 0.38211 |
| LIHC | TCGA-2Y-A9H0-01A | TCGA-2Y-A9H0 | PRKCA|PPP4R4 | PRKCA | PPP4R4 | 17 | 14 | 1 | 1 | 3 | 3 | 3 | 0.78 | 64302245 | 94633881 | tier1 | NA | 13547 | NA | 0.38375 |
| LIHC | TCGA-LG-A9QC-01A | TCGA-LG-A9QC | PRKCA|RP11-540D14.8 | PRKCA | RP11-540D14.8 | 17 | 1 | 1 | 1 | 2 | 1 | 1 | 2.5 | 64302245 | 155057567 | tier2 | Out-of-frame | 13550 | NA | 0.38129 |
| LUAD | TCGA-05-5429-01A | TCGA-05-5429 | PRKCA|PITPNC1 | PRKCA | PITPNC1 | 17 | 17 | 1 | 1 | 4 | 5 | 2 | 0.42 | 64492401 | 65528918 | tier1 | In-frame | 13545 | non-validated | 0.38336 |
| LUSC | TCGA-33-4587-01A | TCGA-33-4587 | PRKCA|IGF2BP3 | PRKCA | IGF2BP3 | 17 | 7 | 1 | -1 | 10 | 9 | 5 | 3 | 64492401 | 23358873 | tier1 | In-frame | 13542 | NA | 0.38297 |
| LUSC | TCGA-66-2793-01A | TCGA-66-2793 | PRKCA|SDK1 | PRKCA | SDK1 | 17 | 7 | 1 | 1 | 3 | 2 | 1 | 0.6 | 64641629 | 3990555 | tier2 | In-frame | 13552 | validated | 0.38298 |
| SARC | TCGA-3B-A9HS-01A | TCGA-3B-A9HS | PRKCA|RAB40B | PRKCA | RAB40B | 17 | 17 | 1 | -1 | 2 | 2 | 2 | 1.2 | 64302245 | 80617533 | tier3 | Out-of-frame | 13548 | NA | 0.38502 |
| SKCM | TCGA-EB-A4XL-01A | TCGA-EB-A4XL | PRKCA|PITPNC1 | PRKCA | PITPNC1 | 17 | 17 | 1 | 1 | 39 | 18 | 16 | 0.42 | 64302245 | 65665624 | tier1 | Out-of-frame | 13546 | NA | 0.38336 |
| STAD | TCGA-VQ-A925-01A | TCGA-VQ-A925 | PRKCA|CEP112 | PRKCA | CEP112 | 17 | 17 | 1 | -1 | 2 | 12 | 11 | 0.2 | 64492401 | 63848152 | tier2 | In-frame | 13539 | NA | 0.38129 |
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