Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BLCA | TCGA-DK-AA6S-01A | TCGA-DK-AA6S | GPR110|TNFRSF21 | GPR110 | TNFRSF21 | 6 | 6 | -1 | -1 | 181 | 201 | 199 | 2.4 | 46989694 | 47254331 | tier1 | In-frame | 7352 | NA | 0.35842 |
| BLCA | TCGA-DK-AA6U-01A | TCGA-DK-AA6U | GPR110|TNFRSF21 | GPR110 | TNFRSF21 | 6 | 6 | -1 | -1 | 17 | 12 | 11 | 2.4 | 47009927 | 47202634 | tier1 | 5UTR-CDS | 7353 | NA | 0.35842 |
| BLCA | TCGA-FD-A62P-01A | TCGA-FD-A62P | GPR110|TNFRSF21 | GPR110 | TNFRSF21 | 6 | 6 | -1 | -1 | 24 | 7 | 7 | 2.4 | 46984353 | 47221257 | tier1 | In-frame | 7355 | NA | 0.35842 |
| LIHC | TCGA-ED-A82E-01A | TCGA-ED-A82E | GPR110|TNFRSF21 | GPR110 | TNFRSF21 | 6 | 6 | -1 | -1 | 10 | 6 | 6 | 2.4 | 46976681 | 47221257 | tier1 | Out-of-frame | 7354 | NA | 0.35842 |
| OV | TCGA-13-1505-01A | TCGA-13-1505 | GPR110|TRERF1 | GPR110 | TRERF1 | 6 | 6 | -1 | -1 | 3 | 1 | 1 | 0.43 | 46993590 | 42204149 | tier2 | Out-of-frame | 7356 | NA | 0.37872 |
| DLBC | TCGA-GR-A4D4-01A | TCGA-GR-A4D4 | ING1|CARKD | ING1 | CARKD | 13 | 13 | 1 | 1 | 30 | 39 | 36 | 0.95 | 111366632 | 111274563 | tier1 | In-frame | 8231 | NA | 0.3641 |
| SARC | TCGA-IF-A3RQ-01A | TCGA-IF-A3RQ | PTPRD|TRHDE | PTPRD | TRHDE | 9 | 12 | -1 | 1 | 2 | 5 | 2 | 0.004 | 8314247 | 72666463 | tier3 | 3UTR-5UTR | 13852 | NA | 0.36898 |
| HNSC | TCGA-CV-7407-01A | TCGA-CV-7407 | PTPRD|IDO1 | PTPRD | IDO1 | 9 | 8 | -1 | 1 | 54 | 30 | 28 | 0.22 | 8733780 | 39771408 | tier1 | CDS-5UTR | 13850 | NA | 0.36486 |
| BRCA | TCGA-E9-A54X-01A | TCGA-E9-A54X | PTPRD|RAC2 | PTPRD | RAC2 | 9 | 22 | -1 | -1 | 2 | 1 | 1 | 0.53 | 10612398 | 37637698 | tier3 | 5UTR-CDS | 13851 | NA | 0.37975 |
| HNSC | TCGA-CQ-6224-01A | TCGA-CQ-6224 | PTPRD|CYGB | PTPRD | CYGB | 9 | 17 | -1 | -1 | 18 | 9 | 8 | 2.4 | 9938507 | 74527224 | tier1 | 5UTR-CDS | 13849 | NA | 0.36661 |
| PRAD | TCGA-EJ-5514-01A | TCGA-EJ-5514 | PTPRD|C9orf92 | PTPRD | C9orf92 | 9 | 9 | -1 | -1 | 16 | 14 | 14 | 0.46 | 8633317 | 16215897 | tier1 | CDS-5UTR | 13848 | NA | 0 |
| HNSC | TCGA-F7-7848-01A | TCGA-F7-7848 | TMPRSS11D|SPINK2 | TMPRSS11D | SPINK2 | 4 | 4 | -1 | -1 | 2 | 3 | 3 | 0.92 | 68749644 | 57677960 | tier2 | Out-of-frame | 18082 | NA | 0 |
| LUAD | TCGA-55-6971-01A | TCGA-55-6971 | MCOLN2|CDK1 | MCOLN2 | CDK1 | 1 | 10 | -1 | 1 | 10 | 5 | 2 | 0.69 | 85462479 | 62539899 | tier1 | CDS-5UTR | 10104 | NA | 0.33626 |
| LAML | TCGA-AB-2939-03A | TCGA-AB-2939 | CHD1|MTOR | CHD1 | MTOR | 5 | 1 | -1 | -1 | 16 | 47 | 45 | 0.012 | 98199112 | 11273623 | tier1 | Out-of-frame | 3610 | NA | 0.36393 |
| PRAD | TCGA-HC-A6AP-01A | TCGA-HC-A6AP | CHD1|SLCO6A1 | CHD1 | SLCO6A1 | 5 | 5 | -1 | -1 | 16 | 23 | 20 | 0.013 | 98228229 | 101748847 | tier1 | In-frame | 3612 | NA | 0.3676 |
| COAD | TCGA-DM-A288-01A | TCGA-DM-A288 | CHD1|RGMB | CHD1 | RGMB | 5 | 5 | -1 | 1 | 30 | 25 | 23 | 0.28 | 98215256 | 98128789 | tier1 | In-frame | 3611 | NA | 0.36754 |
| SARC | TCGA-K1-A6RT-01A | TCGA-K1-A6RT | CACNA2D1|PTPN12 | CACNA2D1 | PTPN12 | 7 | 7 | -1 | 1 | 4 | 2 | 2 | 0.92 | 81964451 | 77200395 | tier1 | In-frame | 2868 | NA | 0.37142 |
| HNSC | TCGA-CN-4723-01A | TCGA-CN-4723 | CACNA2D1|NAALADL2 | CACNA2D1 | NAALADL2 | 7 | 3 | -1 | 1 | 11 | 12 | 10 | 0.11 | 81964451 | 175455094 | tier1 | In-frame | 2867 | NA | 0.3443 |
| LUSC | TCGA-77-A5G7-01B | TCGA-77-A5G7 | SEMA3D|KCNU1 | SEMA3D | KCNU1 | 7 | 8 | -1 | 1 | 5 | 1 | 1 | 0.24 | 84727121 | 36721922 | tier2 | Out-of-frame | 15546 | NA | 0 |
| PRAD | TCGA-CH-5788-01A | TCGA-CH-5788 | SEMA3D|RBM28 | SEMA3D | RBM28 | 7 | 7 | -1 | -1 | 14 | 11 | 11 | 0.051 | 84782924 | 127979845 | tier1 | 5UTR-CDS | 15547 | non-validated | 0 |
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