Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
| Showing page 203 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PAAD | TCGA-IB-7654-01A | TCGA-IB-7654 | CPB1|DDX21 | CPB1 | DDX21 | 3 | 10 | 1 | 1 | 2 | 607 | 567 | 0.3 | 148577970 | 70723858 | tier4 | NA | 4104 | NA | 0.3677 |
| SKCM | TCGA-EE-A3JI-06A | TCGA-EE-A3JI | CDYL|EEF1E1 | CDYL | EEF1E1 | 6 | 6 | 1 | -1 | 25 | 14 | 12 | 0.003 | 4892613 | 8097700 | tier1 | Out-of-frame | 3483 | non-validated | 0.37246 |
| ACC | TCGA-OR-A5K5-01A | TCGA-OR-A5K5 | TXNDC11|BAMBI | TXNDC11 | BAMBI | 16 | 10 | -1 | 1 | 8 | 11 | 11 | 0.21 | 11836333 | 28970187 | tier1 | Out-of-frame | 18978 | NA | 0 |
| ACC | TCGA-OR-A5K5-01A | TCGA-OR-A5K5 | TXNDC11|CIB4 | TXNDC11 | CIB4 | 16 | 2 | -1 | -1 | 27 | 20 | 16 | 0.024 | 11829873 | 26863435 | tier1 | In-frame | 18979 | NA | 0 |
| BRCA | TCGA-E2-A15A-01A | TCGA-E2-A15A | TXNDC11|ZC3H7A | TXNDC11 | ZC3H7A | 16 | 16 | -1 | -1 | 5 | 4 | 4 | 0.43 | 11836333 | 11850226 | tier1 | Out-of-frame | 18982 | NA | 0 |
| LIHC | TCGA-FV-A496-01A | TCGA-FV-A496 | TXNDC11|RP11-166B2.1 | TXNDC11 | RP11-166B2.1 | 16 | 16 | -1 | -1 | 5 | 3 | 3 | 1.6 | 11824501 | 12031525 | tier1 | In-frame | 18981 | non-validated | 0 |
| OV | TCGA-10-0934-01A | TCGA-10-0934 | TXNDC11|GSPT1 | TXNDC11 | GSPT1 | 16 | 16 | -1 | -1 | 15 | 19 | 14 | 0.23 | 11836333 | 11980788 | tier1 | Out-of-frame | 18980 | non-validated | 0 |
| BRCA | TCGA-C8-A12U-01A | TCGA-C8-A12U | RANBP2|BMP5 | RANBP2 | BMP5 | 2 | 6 | 1 | -1 | 7 | 4 | 4 | 0.47 | 109371715 | 55659225 | tier1 | Out-of-frame | 14255 | NA | 0 |
| SARC | TCGA-DX-A3LT-01A | TCGA-DX-A3LT | PTPRR|SLC6A15 | PTPRR | SLC6A15 | 12 | 12 | -1 | -1 | 30 | 9 | 9 | 0.15 | 71147971 | 85286087 | tier1 | CDS-5UTR | 13913 | non-validated | 0 |
| SARC | TCGA-DX-A1L4-01A | TCGA-DX-A1L4 | PTPRR|CPM | PTPRR | CPM | 12 | 12 | -1 | -1 | 11 | 2 | 2 | 0.84 | 71077907 | 69265736 | tier1 | In-frame | 13908 | NA | 0 |
| SARC | TCGA-DX-AB35-01A | TCGA-DX-AB35 | PTPRR|KCNC2 | PTPRR | KCNC2 | 12 | 12 | -1 | -1 | 47 | 27 | 24 | 0.71 | 71092045 | 75445097 | tier1 | Out-of-frame | 13910 | NA | 0 |
| LGG | TCGA-DU-A5TY-01A | TCGA-DU-A5TY | PTPRR|VWC2 | PTPRR | VWC2 | 12 | 7 | -1 | 1 | 2 | 3 | 3 | 0.019 | 71050484 | 49951630 | tier2 | Out-of-frame | 13914 | NA | 0 |
| BLCA | TCGA-GC-A3RD-01A | TCGA-GC-A3RD | PTPRR|CHPT1 | PTPRR | CHPT1 | 12 | 12 | -1 | 1 | 13 | 10 | 7 | 0.87 | 71286459 | 102110506 | tier1 | Out-of-frame | 13907 | NA | 0 |
| SARC | TCGA-DX-AB2F-01A | TCGA-DX-AB2F | PTPRR|FAM19A2 | PTPRR | FAM19A2 | 12 | 12 | -1 | -1 | 2 | 2 | 2 | 0.15 | 71139598 | 62417560 | tier2 | CDS-5UTR | 13909 | NA | 0 |
| SARC | TCGA-FX-A2QS-01A | TCGA-FX-A2QS | PTPRR|NAV3 | PTPRR | NAV3 | 12 | 12 | -1 | 1 | 31 | 28 | 27 | 1.2 | 71077907 | 78360009 | tier1 | In-frame | 13911 | non-validated | 0 |
| SARC | TCGA-DX-A3U5-01A | TCGA-DX-A3U5 | PTPRR|RP11-536G4.1 | PTPRR | RP11-536G4.1 | 12 | 12 | -1 | 1 | 33 | 5 | 5 | 0.17 | 71314113 | 96216867 | tier1 | Out-of-frame | 13912 | non-validated | 0 |
| SKCM | TCGA-EE-A2MS-06A | TCGA-EE-A2MS | PTPRR|C12orf54 | PTPRR | C12orf54 | 12 | 12 | -1 | 1 | 15 | 10 | 9 | 0.38 | 71158445 | 48880471 | tier1 | In-frame | 13906 | NA | 0 |
| HNSC | TCGA-HD-A634-01A | TCGA-HD-A634 | NR4A2|GPD2 | NR4A2 | GPD2 | 2 | 2 | -1 | 1 | 12 | 11 | 10 | 0.21 | 157187180 | 157332610 | tier1 | 5UTR-5UTR | 11727 | NA | 0.3809 |
| HNSC | TCGA-CR-7370-01A | TCGA-CR-7370 | PLA2R1|ITGB6 | PLA2R1 | ITGB6 | 2 | 2 | -1 | -1 | 104 | 63 | 58 | 0.12 | 160832579 | 160998582 | tier1 | In-frame | 12941 | NA | 0.36712 |
| BLCA | TCGA-GV-A3JZ-01A | TCGA-GV-A3JZ | GPR110|MEP1A | GPR110 | MEP1A | 6 | 6 | -1 | 1 | 8 | 3 | 3 | 0.046 | 47009927 | 46800811 | tier1 | 5UTR-CDS | 7351 | NA | 0.36591 |
|
Showing page 203 |
first page | previous page | next page | last page |
Copyright © 2020 University of Pennsylvania. All Rights Reserved.