Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BLCA | TCGA-ZF-A9RN-01A | TCGA-ZF-A9RN | PTPRK|POPDC3 | PTPRK | POPDC3 | 6 | 6 | -1 | -1 | 5 | 7 | 6 | 0.29 | 128718711 | 105610035 | tier1 | CDS-5UTR | 13885 | NA | 0 |
| BLCA | TCGA-DK-AA6P-01A | TCGA-DK-AA6P | PTPRK|SAMD3 | PTPRK | SAMD3 | 6 | 6 | -1 | -1 | 3 | 7 | 7 | 0.067 | 128718711 | 130505768 | tier1 | Out-of-frame | 13895 | NA | 0 |
| BRCA | TCGA-BH-A1F0-01A | TCGA-BH-A1F0 | PTPRK|C6orf203 | PTPRK | C6orf203 | 6 | 6 | -1 | 1 | 35 | 29 | 24 | 1.2 | 128841404 | 107365464 | tier1 | Out-of-frame | 13873 | NA | 0 |
| BRCA | TCGA-E9-A1NA-01A | TCGA-E9-A1NA | PTPRK|HECA | PTPRK | HECA | 6 | 6 | -1 | 1 | 253 | 172 | 163 | 0.36 | 128841404 | 139487421 | tier1 | In-frame | 13880 | NA | 0 |
| BRCA | TCGA-AO-A0JD-01A | TCGA-AO-A0JD | PTPRK|OXR1 | PTPRK | OXR1 | 6 | 8 | -1 | 1 | 4 | 1 | 1 | 0.29 | 128841404 | 107531171 | tier2 | Out-of-frame | 13882 | NA | 0 |
| BRCA | TCGA-BH-A18I-01A | TCGA-BH-A18I | PTPRK|PLN | PTPRK | PLN | 6 | 6 | -1 | 1 | 2 | 5 | 4 | 1.5 | 128643184 | 118879988 | tier3 | CDS-5UTR | 13884 | NA | 0 |
| BRCA | TCGA-A2-A04W-01A | TCGA-A2-A04W | PTPRK|STXBP6 | PTPRK | STXBP6 | 6 | 14 | -1 | -1 | 153 | 148 | 134 | 0.26 | 128505577 | 25326363 | tier1 | In-frame | 13898 | NA | 0 |
| COAD | TCGA-G4-6625-01A | TCGA-G4-6625 | PTPRK|BCKDHB | PTPRK | BCKDHB | 6 | 6 | -1 | 1 | 60 | 34 | 30 | 2.9 | 128841404 | 80837264 | tier1 | In-frame | 13872 | NA | 0.37231 |
| COAD | TCGA-CM-6164-01A | TCGA-CM-6164 | PTPRK|EPB41L2 | PTPRK | EPB41L2 | 6 | 6 | -1 | -1 | 39 | 18 | 16 | 0.024 | 128841404 | 131184858 | tier1 | Out-of-frame | 13876 | NA | 0 |
| ESCA | TCGA-JY-A938-01A | TCGA-JY-A938 | PTPRK|ARHGAP18 | PTPRK | ARHGAP18 | 6 | 6 | -1 | -1 | 2 | 9 | 9 | 0.94 | 128505577 | 129939997 | tier2 | Out-of-frame | 13871 | NA | 0.37414 |
| PRAD | TCGA-EJ-5514-01A | TCGA-EJ-5514 | PTPRK|ECHDC1 | PTPRK | ECHDC1 | 6 | 6 | -1 | -1 | 79 | 51 | 48 | 0.57 | 128841404 | 127652175 | tier1 | CDS-5UTR | 13874 | NA | 0 |
| PRAD | TCGA-G9-6333-01A | TCGA-G9-6333 | PTPRK|ECHDC1 | PTPRK | ECHDC1 | 6 | 6 | -1 | -1 | 6 | 23 | 23 | 0.57 | 128561180 | 127611422 | tier2 | Out-of-frame | 13875 | NA | 0 |
| SARC | TCGA-DX-A23R-01A | TCGA-DX-A23R | PTPRK|PEX5L | PTPRK | PEX5L | 6 | 3 | -1 | -1 | 5 | 2 | 2 | 0.16 | 128505577 | 179605572 | tier1 | Out-of-frame | 13883 | validated | 0 |
| SKCM | TCGA-EB-A5KH-06A | TCGA-EB-A5KH | PTPRK|EYA4 | PTPRK | EYA4 | 6 | 6 | -1 | 1 | 3 | 2 | 2 | 0.03 | 128505577 | 133782252 | tier1 | In-frame | 13877 | NA | 0 |
| UCEC | TCGA-D1-A3DH-01A | TCGA-D1-A3DH | PTPRK|FBXO5 | PTPRK | FBXO5 | 6 | 6 | -1 | -1 | 8 | 4 | 3 | 1.7 | 128718711 | 153296756 | tier1 | In-frame | 13879 | NA | 0 |
| BRCA | TCGA-AR-A252-01A | TCGA-AR-A252 | CPB1|ANXA1 | CPB1 | ANXA1 | 3 | 9 | 1 | 1 | 2 | 88 | 78 | 0.04 | 148577970 | 75772570 | tier3 | 3UTR-5UTR | 4101 | NA | 0.37492 |
| BRCA | TCGA-EW-A2FS-01A | TCGA-EW-A2FS | CPB1|AP3S2 | CPB1 | AP3S2 | 3 | 15 | 1 | -1 | 2 | 4 | 1 | 1.3 | 148577974 | 90420656 | tier3 | 3UTR-CDS | 4102 | NA | 0.35363 |
| BRCA | TCGA-LL-A5YM-01A | TCGA-LL-A5YM | CPB1|ATP5G3 | CPB1 | ATP5G3 | 3 | 2 | 1 | -1 | 2 | 4 | 2 | 0.34 | 148577974 | 176049335 | tier3 | 3UTR-5UTR | 4103 | NA | 0.34806 |
| BRCA | TCGA-AO-A0JI-01A | TCGA-AO-A0JI | CPB1|NDUFV1 | CPB1 | NDUFV1 | 3 | 11 | 1 | 1 | 2 | 21 | 13 | 100 | 148577970 | 67375697 | tier3 | NA | 4105 | NA | 0.35082 |
| BRCA | TCGA-E9-A1NE-01A | TCGA-E9-A1NE | CPB1|SNW1 | CPB1 | SNW1 | 3 | 14 | 1 | -1 | 2 | 68 | 60 | 0.47 | 148577970 | 78189203 | tier4 | 3UTR-CDS | 4106 | NA | 0.3635 |
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