Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-A2-A0CL-01A | TCGA-A2-A0CL | MBNL1|DZIP1L | MBNL1 | DZIP1L | 3 | 3 | 1 | -1 | 3 | 2 | 2 | 0.8 | 152018156 | 137805865 | tier1 | In-frame | 10050 | NA | 0.34649 |
| LUAD | TCGA-62-8395-01A | TCGA-62-8395 | MBNL1|SGSM3 | MBNL1 | SGSM3 | 3 | 22 | 1 | 1 | 22 | 19 | 18 | 0.052 | 152150709 | 40796700 | tier1 | CDS-5UTR | 10053 | NA | 0.35577 |
| LUSC | TCGA-60-2696-01A | TCGA-60-2696 | MBNL1|DCUN1D1 | MBNL1 | DCUN1D1 | 3 | 3 | 1 | -1 | 24 | 9 | 9 | 0.52 | 152018156 | 182683541 | tier1 | In-frame | 10049 | NA | 0.35174 |
| PRAD | TCGA-EJ-7792-01A | TCGA-EJ-7792 | MBNL1|NMNAT3 | MBNL1 | NMNAT3 | 3 | 3 | 1 | -1 | 55 | 44 | 35 | 2 | 151986881 | 139297897 | tier1 | 5UTR-5UTR | 10052 | NA | 0.33872 |
| OV | TCGA-57-1583-01A | TCGA-57-1583 | SLC30A6|BRE | SLC30A6 | BRE | 2 | 2 | 1 | 1 | 14 | 26 | 21 | 0.096 | 32400430 | 28460069 | tier1 | In-frame | 16145 | NA | 0 |
| PRAD | TCGA-EJ-7312-01B | TCGA-EJ-7312 | SLC30A6|ACTR2 | SLC30A6 | ACTR2 | 2 | 2 | 1 | 1 | 4 | 5 | 4 | 0.2 | 32399216 | 65492177 | tier1 | Out-of-frame | 16144 | NA | 0 |
| SARC | TCGA-DX-A3U5-01A | TCGA-DX-A3U5 | GRM1|CNOT2 | GRM1 | CNOT2 | 6 | 12 | 1 | 1 | 3 | 10 | 9 | 0.097 | 146720835 | 70713078 | tier2 | Out-of-frame | 7467 | validated | 0.37536 |
| READ | TCGA-EI-7002-01A | TCGA-EI-7002 | PTPRK|IL20RA | PTPRK | IL20RA | 6 | 6 | -1 | -1 | 61 | 44 | 40 | 9.4 | 128841404 | 137338240 | tier1 | In-frame | 13881 | NA | 0 |
| CHOL | TCGA-ZH-A8Y1-01A | TCGA-ZH-A8Y1 | PTPRK|SMNDC1 | PTPRK | SMNDC1 | 6 | 10 | -1 | -1 | 148 | 107 | 102 | 0.45 | 128561180 | 112058548 | tier4 | In-frame | 13896 | NA | 0 |
| COAD | TCGA-CA-5255-01A | TCGA-CA-5255 | PTPRK|RSPO3 | PTPRK | RSPO3 | 6 | 6 | -1 | 1 | 37 | 32 | 31 | 0.049 | 128841404 | 127469793 | tier1 | In-frame | 13887 | NA | 0 |
| COAD | TCGA-D5-6539-01A | TCGA-D5-6539 | PTPRK|RSPO3 | PTPRK | RSPO3 | 6 | 6 | -1 | 1 | 86 | 36 | 36 | 0.049 | 128841404 | 127469793 | tier1 | In-frame | 13888 | NA | 0 |
| COAD | TCGA-DM-A1HB-01A | TCGA-DM-A1HB | PTPRK|RSPO3 | PTPRK | RSPO3 | 6 | 6 | -1 | 1 | 65 | 71 | 63 | 0.049 | 128505577 | 127469793 | tier1 | In-frame | 13889 | NA | 0 |
| COAD | TCGA-QG-A5YX-01A | TCGA-QG-A5YX | PTPRK|RSPO3 | PTPRK | RSPO3 | 6 | 6 | -1 | 1 | 73 | 45 | 41 | 0.049 | 128841404 | 127469793 | tier1 | In-frame | 13893 | non-validated | 0 |
| ESCA | TCGA-JY-A938-01A | TCGA-JY-A938 | PTPRK|RSPO3 | PTPRK | RSPO3 | 6 | 6 | -1 | 1 | 9 | 60 | 51 | 0.049 | 128505577 | 127469793 | tier1 | In-frame | 13892 | NA | 0 |
| READ | TCGA-AF-6136-01A | TCGA-AF-6136 | PTPRK|RSPO3 | PTPRK | RSPO3 | 6 | 6 | -1 | 1 | 48 | 20 | 16 | 0.049 | 128841404 | 127469793 | tier1 | In-frame | 13886 | NA | 0 |
| READ | TCGA-DT-5265-01A | TCGA-DT-5265 | PTPRK|RSPO3 | PTPRK | RSPO3 | 6 | 6 | -1 | 1 | 17 | 16 | 12 | 0.049 | 128841404 | 127469793 | tier1 | In-frame | 13890 | NA | 0 |
| READ | TCGA-G5-6233-01A | TCGA-G5-6233 | PTPRK|RSPO3 | PTPRK | RSPO3 | 6 | 6 | -1 | 1 | 57 | 41 | 36 | 0.049 | 128505577 | 127469793 | tier1 | In-frame | 13891 | NA | 0 |
| STAD | TCGA-VQ-AA68-01A | TCGA-VQ-AA68 | PTPRK|RSPO3 | PTPRK | RSPO3 | 6 | 6 | -1 | 1 | 30 | 229 | 211 | 0.049 | 128841404 | 127469793 | tier1 | In-frame | 13894 | NA | 0 |
| BRCA | TCGA-A2-A0CY-01A | TCGA-A2-A0CY | PTPRK|SPARCL1 | PTPRK | SPARCL1 | 6 | 4 | -1 | -1 | 8 | 6 | 6 | 0.19 | 128505577 | 88420737 | tier1 | CDS-5UTR | 13897 | NA | 0 |
| UCEC | TCGA-AJ-A3IA-01A | TCGA-AJ-A3IA | PTPRK|EYS | PTPRK | EYS | 6 | 6 | -1 | -1 | 3 | 2 | 2 | 0.19 | 128841404 | 65303202 | tier1 | Out-of-frame | 13878 | NA | 0 |
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