Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
| Showing page 200 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| COAD | TCGA-CM-5348-01A | TCGA-CM-5348 | ATP5A1|HAUS1 | ATP5A1 | HAUS1 | 18 | 18 | -1 | 1 | 11 | 4 | 4 | 1.1 | 43684103 | 43698147 | tier1 | 5UTR-CDS | 1735 | NA | 0.36918 |
| BLCA | TCGA-FD-A6TD-01A | TCGA-FD-A6TD | PDE3B|MICAL2 | PDE3B | MICAL2 | 11 | 11 | 1 | 1 | 5 | 1 | 1 | 2.3 | 14666599 | 12183626 | tier3 | CDS-5UTR | 12468 | NA | 0.36928 |
| SKCM | TCGA-GN-A8LN-01A | TCGA-GN-A8LN | PDE3B|PLCXD3 | PDE3B | PLCXD3 | 11 | 5 | 1 | -1 | 9 | 10 | 9 | 0.38 | 14889304 | 41313872 | tier1 | Out-of-frame | 12469 | NA | 0.36445 |
| SKCM | TCGA-WE-A8ZM-06A | TCGA-WE-A8ZM | PDE3B|ZNF212 | PDE3B | ZNF212 | 11 | 7 | 1 | 1 | 57 | 24 | 19 | 0.14 | 14856641 | 148947772 | tier1 | Out-of-frame | 12470 | NA | 0.37269 |
| LGG | TCGA-DH-A66D-01A | TCGA-DH-A66D | KCNK13|TDP1 | KCNK13 | TDP1 | 14 | 14 | 1 | 1 | 7 | 2 | 1 | 4 | 90528883 | 90509414 | tier2 | In-frame | 8578 | NA | 0.35215 |
| BRCA | TCGA-E9-A1NA-01A | TCGA-E9-A1NA | UHMK1|PPOX | UHMK1 | PPOX | 1 | 1 | 1 | 1 | 27 | 26 | 26 | 1.8 | 162487980 | 161139450 | tier1 | In-frame | 19202 | NA | 0 |
| LUAD | TCGA-95-A4VK-01A | TCGA-95-A4VK | SPOCK1|ARHGAP26 | SPOCK1 | ARHGAP26 | 5 | 5 | -1 | 1 | 4 | 5 | 5 | 0.13 | 136834062 | 142500553 | tier1 | Out-of-frame | 16739 | NA | 0 |
| PRAD | TCGA-V1-A9OL-01A | TCGA-V1-A9OL | SPOCK1|CDC23 | SPOCK1 | CDC23 | 5 | 5 | -1 | -1 | 4 | 4 | 3 | 0.16 | 136834062 | 137548752 | tier1 | Out-of-frame | 16740 | NA | 0 |
| BLCA | TCGA-2F-A9KO-01A | TCGA-2F-A9KO | GUCY1A2|NLK | GUCY1A2 | NLK | 11 | 17 | -1 | 1 | 7 | 5 | 5 | 0.84 | 106647165 | 26512205 | tier1 | In-frame | 7558 | NA | 0.37648 |
| OV | TCGA-04-1348-01A | TCGA-04-1348 | TMEM123|MMP7 | TMEM123 | MMP7 | 11 | 11 | -1 | -1 | 52 | 65 | 57 | 0.14 | 102319543 | 102395795 | tier1 | In-frame | 17954 | NA | 0 |
| BRCA | TCGA-OL-A66I-01A | TCGA-OL-A66I | TMEM123|MMP20 | TMEM123 | MMP20 | 11 | 11 | -1 | -1 | 8 | 2 | 2 | 0.87 | 102319543 | 102480761 | tier1 | In-frame | 17952 | NA | 0 |
| COAD | TCGA-CA-5254-01A | TCGA-CA-5254 | TMEM123|MMP20 | TMEM123 | MMP20 | 11 | 11 | -1 | -1 | 9 | 12 | 11 | 0.87 | 102319543 | 102464326 | tier1 | In-frame | 17950 | NA | 0 |
| LUAD | TCGA-35-4122-01A | TCGA-35-4122 | TMEM123|MMP20 | TMEM123 | MMP20 | 11 | 11 | -1 | -1 | 7 | 6 | 4 | 0.87 | 102319543 | 102480761 | tier1 | In-frame | 17949 | NA | 0 |
| STAD | TCGA-CD-8527-01A | TCGA-CD-8527 | TMEM123|MMP20 | TMEM123 | MMP20 | 11 | 11 | -1 | -1 | 24 | 410 | 366 | 0.87 | 102319543 | 102449873 | tier1 | Out-of-frame | 17951 | NA | 0 |
| BRCA | TCGA-A7-A13D-01B | TCGA-A7-A13D | TMEM123|MMP27 | TMEM123 | MMP27 | 11 | 11 | -1 | -1 | 4 | 23 | 16 | 0.02 | 102319543 | 102563772 | tier1 | Out-of-frame | 17953 | validated | 0 |
| UCEC | TCGA-D1-A3JP-01A | TCGA-D1-A3JP | TMEM123|MMP10 | TMEM123 | MMP10 | 11 | 11 | -1 | -1 | 8 | 8 | 8 | 0.22 | 102319543 | 102650092 | tier1 | Out-of-frame | 17948 | NA | 0 |
| BLCA | TCGA-E7-A7DV-01A | TCGA-E7-A7DV | TMEM123|CENPP | TMEM123 | CENPP | 11 | 9 | -1 | 1 | 60 | 49 | 39 | 0.32 | 102319543 | 95373596 | tier1 | Out-of-frame | 17946 | NA | 0 |
| BRCA | TCGA-AO-A0JD-01A | TCGA-AO-A0JD | TMEM123|CNTN5 | TMEM123 | CNTN5 | 11 | 11 | -1 | 1 | 6 | 38 | 36 | 0.019 | 102272270 | 99426876 | tier1 | CDS-5UTR | 17947 | NA | 0 |
| LGG | TCGA-DB-5277-01A | TCGA-DB-5277 | GRIA4|NAALAD2 | GRIA4 | NAALAD2 | 11 | 11 | 1 | 1 | 77 | 44 | 39 | 0.21 | 105732934 | 89906992 | tier2 | In-frame | 7441 | NA | 0.37393 |
| BRCA | TCGA-C8-A12Y-01A | TCGA-C8-A12Y | MBNL1|NAALADL2 | MBNL1 | NAALADL2 | 3 | 3 | 1 | 1 | 3 | 5 | 5 | 1.1 | 152018156 | 174455431 | tier1 | NA | 10051 | NA | 0.33849 |
|
Showing page 200 |
first page | previous page | next page | last page |
Copyright © 2020 University of Pennsylvania. All Rights Reserved.