Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUSC | TCGA-94-8491-01A | TCGA-94-8491 | NEK7|RAB3GAP2 | NEK7 | RAB3GAP2 | 1 | 1 | 1 | -1 | 4 | 3 | 3 | 0.088 | 198126406 | 220387321 | tier1 | 5UTR-CDS | 11363 | NA | 0.36478 |
| SARC | TCGA-DX-A8BG-01A | TCGA-DX-A8BG | FER|COMMD10 | FER | COMMD10 | 5 | 5 | 1 | 1 | 6 | 8 | 8 | 0.63 | 108171508 | 115627214 | tier1 | Out-of-frame | 6419 | NA | 0.38163 |
| SKCM | TCGA-EB-A82C-01A | TCGA-EB-A82C | FER|FBXL17 | FER | FBXL17 | 5 | 5 | 1 | -1 | 14 | 3 | 2 | 2.2 | 108233549 | 107197561 | tier1 | In-frame | 6420 | NA | 0.38362 |
| PRAD | TCGA-V1-A9O5-06A | TCGA-V1-A9O5 | CCDC3|FXYD1 | CCDC3 | FXYD1 | 10 | 19 | -1 | 1 | 62 | 64 | 62 | 0.22 | 13040338 | 35630980 | tier1 | CDS-5UTR | 3136 | NA | 0.35753 |
| CHOL | TCGA-W5-AA2T-01A | TCGA-W5-AA2T | NR3C2|SPATA17 | NR3C2 | SPATA17 | 4 | 1 | -1 | 1 | 15 | 2 | 2 | 0.1 | 149356256 | 218036116 | tier1 | Out-of-frame | 11725 | NA | 0.37538 |
| GBM | TCGA-06-2561-01A | TCGA-06-2561 | MFSD6|CALCRL | MFSD6 | CALCRL | 2 | 2 | 1 | -1 | 2 | 4 | 4 | 0.26 | 191302287 | 188228229 | tier3 | In-frame | 10295 | NA | 0.35622 |
| BRCA | TCGA-A8-A06U-01A | TCGA-A8-A06U | MFSD6|CXorf66 | MFSD6 | CXorf66 | 2 | X | 1 | -1 | 7 | 9 | 9 | 0.22 | 191302287 | 139040376 | tier1 | Out-of-frame | 10296 | NA | 0 |
| OV | TCGA-24-1545-01A | TCGA-24-1545 | MFSD6|C2orf88 | MFSD6 | C2orf88 | 2 | 2 | 1 | 1 | 6 | 4 | 4 | 2.4 | 191302287 | 191064423 | tier1 | CDS-5UTR | 10294 | NA | 0 |
| GBM | TCGA-76-4929-01A | TCGA-76-4929 | ADAM17|YWHAQ | ADAM17 | YWHAQ | 2 | 2 | -1 | -1 | 71 | 233 | 199 | 0.098 | 9675963 | 9731644 | tier1 | In-frame | 410 | NA | 0.37759 |
| SARC | TCGA-DX-A2IZ-01A | TCGA-DX-A2IZ | CCL28|PLCXD3 | CCL28 | PLCXD3 | 5 | 5 | -1 | -1 | 5 | 1 | 1 | 0.86 | 43397137 | 41382636 | tier2 | 5UTR-CDS | 3204 | non-validated | 0.34582 |
| HNSC | TCGA-CV-7248-01A | TCGA-CV-7248 | DST|FBLN5 | DST | FBLN5 | 6 | 14 | -1 | -1 | 33 | 28 | 26 | 0.6 | 56368795 | 92403545 | tier1 | Out-of-frame | 5133 | NA | 0.37325 |
| GBM | TCGA-06-0216-01B | TCGA-06-0216 | DST|EYS | DST | EYS | 6 | 6 | -1 | -1 | 4 | 7 | 7 | 0.062 | 56716195 | 64574251 | tier1 | Out-of-frame | 5131 | NA | 0.37386 |
| LIHC | TCGA-UB-A7MA-01A | TCGA-UB-A7MA | DST|EYS | DST | EYS | 6 | 6 | -1 | -1 | 4 | 5 | 2 | 0.062 | 56391159 | 66205886 | tier1 | CDS-5UTR | 5132 | NA | 0.37386 |
| BRCA | TCGA-AN-A04A-01A | TCGA-AN-A04A | DST|KIAA0319L | DST | KIAA0319L | 6 | 1 | -1 | -1 | 19 | 8 | 7 | 1.2 | 56564451 | 35900682 | tier1 | Out-of-frame | 5135 | NA | 0.37013 |
| LUAD | TCGA-35-4123-01A | TCGA-35-4123 | DST|HCST | DST | HCST | 6 | 19 | -1 | 1 | 66 | 52 | 36 | 0.43 | 56707853 | 36394253 | tier1 | In-frame | 5134 | NA | 0.37055 |
| LUSC | TCGA-56-7822-01A | TCGA-56-7822 | DST|AKAP6 | DST | AKAP6 | 6 | 14 | -1 | 1 | 5 | 5 | 5 | 0.051 | 56464867 | 33147517 | tier1 | In-frame | 5130 | NA | 0.36994 |
| LUSC | TCGA-60-2711-01A | TCGA-60-2711 | DST|TRIM38 | DST | TRIM38 | 6 | 6 | -1 | 1 | 12 | 3 | 2 | 0.066 | 56707853 | 25963277 | tier1 | CDS-5UTR | 5137 | non-validated | 0.37632 |
| SKCM | TCGA-DA-A1I0-06A | TCGA-DA-A1I0 | DST|MLIP | DST | MLIP | 6 | 6 | -1 | 1 | 12 | 17 | 17 | 1.4 | 56371241 | 53986245 | tier1 | In-frame | 5136 | non-validated | 0.36873 |
| BLCA | TCGA-C4-A0F7-01A | TCGA-C4-A0F7 | PTPN14|NSL1 | PTPN14 | NSL1 | 1 | 1 | -1 | -1 | 51 | 29 | 27 | 0.098 | 214625148 | 212912943 | tier1 | Out-of-frame | 13825 | non-validated | 0.36477 |
| OV | TCGA-23-1122-01A | TCGA-23-1122 | PTPN14|ANKRD44 | PTPN14 | ANKRD44 | 1 | 2 | -1 | -1 | 8 | 6 | 5 | 0.004 | 214537855 | 197832170 | tier1 | NA | 13824 | NA | 0.36423 |
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