Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LGG | TCGA-HT-7477-01B | TCGA-HT-7477 | THRB|PVRL3 | THRB | PVRL3 | 3 | 3 | -1 | 1 | 23 | 8 | 7 | 0.97 | 24338717 | 110830877 | tier1 | 5UTR-CDS | 17795 | NA | 0 |
| BRCA | TCGA-A2-A0CW-01A | TCGA-A2-A0CW | THRB|LMCD1 | THRB | LMCD1 | 3 | 3 | -1 | 1 | 21 | 28 | 21 | 1.7 | 24184992 | 8574423 | tier1 | In-frame | 17794 | NA | 0 |
| ACC | TCGA-OR-A5L6-01A | TCGA-OR-A5L6 | PLBD2|CIDEC | PLBD2 | CIDEC | 12 | 3 | 1 | -1 | 56 | 62 | 54 | 0.4 | 113796695 | 9920195 | tier1 | CDS-5UTR | 12955 | NA | 0.33358 |
| SKCM | TCGA-D3-A3BZ-06A | TCGA-D3-A3BZ | PLBD2|FBXO21 | PLBD2 | FBXO21 | 12 | 12 | 1 | -1 | 2 | 2 | 2 | 0.43 | 113796695 | 117615446 | tier2 | In-frame | 12956 | NA | 0.34513 |
| SARC | TCGA-DX-A240-01A | TCGA-DX-A240 | SLC2A13|HSD17B6 | SLC2A13 | HSD17B6 | 12 | 12 | -1 | 1 | 2 | 3 | 2 | 1.5 | 40499055 | 57167618 | tier2 | CDS-5UTR | 16132 | non-validated | 0 |
| KIRC | TCGA-CJ-5680-01A | TCGA-CJ-5680 | SLC2A13|TERT | SLC2A13 | TERT | 12 | 5 | -1 | -1 | 2 | 2 | 2 | 0.29 | 40345059 | 1282739 | tier2 | Out-of-frame | 16135 | NA | 0 |
| BLCA | TCGA-CU-A0YN-01A | TCGA-CU-A0YN | SLC2A13|ZNF329 | SLC2A13 | ZNF329 | 12 | 19 | -1 | -1 | 2 | 2 | 1 | 0.84 | 40422103 | 58654028 | tier2 | CDS-5UTR | 16136 | NA | 0 |
| GBM | TCGA-06-0129-01A | TCGA-06-0129 | SLC2A13|RP11-478C19.2 | SLC2A13 | RP11-478C19.2 | 12 | 12 | -1 | -1 | 5 | 12 | 11 | 0.067 | 40345059 | 110834257 | tier1 | CDS-5UTR | 16134 | NA | 0 |
| LUAD | TCGA-49-4501-01A | TCGA-49-4501 | SLC2A13|RAB3IP | SLC2A13 | RAB3IP | 12 | 12 | -1 | 1 | 11 | 6 | 6 | 0.057 | 40223905 | 70209144 | tier1 | Out-of-frame | 16133 | NA | 0 |
| SARC | TCGA-DX-A240-01A | TCGA-DX-A240 | SLC2A13|ARHGDIB | SLC2A13 | ARHGDIB | 12 | 12 | -1 | -1 | 57 | 64 | 55 | 0.089 | 40422103 | 15100883 | tier1 | In-frame | 16130 | validated | 0 |
| SKCM | TCGA-WE-A8ZX-06A | TCGA-WE-A8ZX | SLC2A13|FAM186A | SLC2A13 | FAM186A | 12 | 12 | -1 | -1 | 7 | 4 | 3 | 0.59 | 40499055 | 50727886 | tier1 | Out-of-frame | 16131 | NA | 0 |
| BRCA | TCGA-AN-A0AR-01A | TCGA-AN-A0AR | ADAMTS12|C1QTNF3 | ADAMTS12 | C1QTNF3 | 5 | 5 | -1 | -1 | 5 | 2 | 1 | 1.1 | 33891835 | 34035863 | tier2 | Out-of-frame | 428 | NA | 0.3488 |
| BRCA | TCGA-AN-A0XU-01A | TCGA-AN-A0XU | ADAMTS12|ZFR | ADAMTS12 | ZFR | 5 | 5 | -1 | -1 | 12 | 8 | 8 | 1.5 | 33662021 | 32356045 | tier1 | Out-of-frame | 430 | NA | 0.35316 |
| SKCM | TCGA-EB-A44Q-06A | TCGA-EB-A44Q | ADAMTS12|RAI14 | ADAMTS12 | RAI14 | 5 | 5 | -1 | 1 | 11 | 4 | 2 | 0.46 | 33881224 | 34757573 | tier1 | In-frame | 429 | NA | 0.37496 |
| LUSC | TCGA-39-5034-01A | TCGA-39-5034 | NEK7|ATP2B4 | NEK7 | ATP2B4 | 1 | 1 | 1 | 1 | 4 | 2 | 2 | 0.38 | 198126406 | 203651870 | tier1 | 5UTR-5UTR | 11358 | NA | 0.37806 |
| BRCA | TCGA-AR-A0U4-01A | TCGA-AR-A0U4 | NEK7|CRB1 | NEK7 | CRB1 | 1 | 1 | 1 | 1 | 4 | 7 | 7 | 0.11 | 198126406 | 197297552 | tier1 | 5UTR-CDS | 11361 | NA | 0.37001 |
| PRAD | TCGA-EJ-A8FS-01A | TCGA-EJ-A8FS | NEK7|CD1C | NEK7 | CD1C | 1 | 1 | 1 | 1 | 18 | 12 | 12 | 4.5 | 198126406 | 158260924 | tier1 | 5UTR-CDS | 11360 | NA | 0.36749 |
| BLCA | TCGA-K4-A3WU-01B | TCGA-K4-A3WU | NEK7|CADM3 | NEK7 | CADM3 | 1 | 1 | 1 | 1 | 3 | 1 | 1 | 0.55 | 198233365 | 159161726 | tier2 | Out-of-frame | 11359 | NA | 0.36695 |
| SARC | TCGA-QQ-A5VC-01A | TCGA-QQ-A5VC | NEK7|SMYD3 | NEK7 | SMYD3 | 1 | 1 | 1 | -1 | 17 | 19 | 19 | 0.019 | 198201767 | 246093239 | tier1 | In-frame | 11364 | NA | 0.36648 |
| BRCA | TCGA-OK-A5Q2-01A | TCGA-OK-A5Q2 | NEK7|INTS7 | NEK7 | INTS7 | 1 | 1 | 1 | -1 | 5 | 8 | 7 | 0.19 | 198233365 | 212115453 | tier1 | In-frame | 11362 | NA | 0.36323 |
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