Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| KIRC | TCGA-BP-4774-01A | TCGA-BP-4774 | CRIM1|EEF1B2 | CRIM1 | EEF1B2 | 2 | 2 | 1 | 1 | 2 | 2 | 2 | 0.23 | 36669878 | 207024637 | tier3 | CDS-5UTR | 4220 | NA | 0.3648 |
| KIRP | TCGA-G7-6792-01A | TCGA-G7-6792 | CRIM1|HAAO | CRIM1 | HAAO | 2 | 2 | 1 | -1 | 18 | 15 | 15 | 0.26 | 36726490 | 42997722 | tier1 | Out-of-frame | 4221 | NA | 0.35288 |
| LUAD | TCGA-L9-A743-01A | TCGA-L9-A743 | CRIM1|TBC1D25 | CRIM1 | TBC1D25 | 2 | X | 1 | 1 | 5 | 2 | 1 | 0.24 | 36583766 | 48417285 | tier3 | In-frame | 4223 | NA | 0.34995 |
| MESO | TCGA-LK-A4O0-01A | TCGA-LK-A4O0 | CRIM1|AFF3 | CRIM1 | AFF3 | 2 | 2 | 1 | -1 | 2 | 3 | 3 | 0.04 | 36669878 | 100368763 | tier2 | Out-of-frame | 4219 | NA | 0.35331 |
| BRCA | TCGA-A7-A13D-01A | TCGA-A7-A13D | ABCB9|EIF2B1 | ABCB9 | EIF2B1 | 12 | 12 | -1 | -1 | 10 | 6 | 6 | 0.004 | 123428938 | 124107308 | tier1 | In-frame | 52 | validated | 0.36035 |
| HNSC | TCGA-CR-6482-01A | TCGA-CR-6482 | ABCB9|MPHOSPH9 | ABCB9 | MPHOSPH9 | 12 | 12 | -1 | -1 | 3 | 3 | 3 | 1.3 | 123450834 | 123651336 | tier1 | 5UTR-CDS | 53 | non-validated | 0.34899 |
| LUSC | TCGA-22-5477-01A | TCGA-22-5477 | ITPR1|SUMF1 | ITPR1 | SUMF1 | 3 | 3 | 1 | -1 | 6 | 2 | 2 | 4 | 4536190 | 4110429 | tier1 | 5UTR-CDS | 8449 | non-validated | 0.37377 |
| KIRC | TCGA-BP-5195-01A | TCGA-BP-5195 | ITPR1|SETMAR | ITPR1 | SETMAR | 3 | 3 | 1 | 1 | 16 | 6 | 6 | 0.021 | 4695570 | 4354582 | tier1 | In-frame | 8448 | NA | 0.37734 |
| BRCA | TCGA-C8-A1HO-01A | TCGA-C8-A1HO | GPR158|MYO16 | GPR158 | MYO16 | 10 | 13 | 1 | 1 | 65 | 103 | 94 | 0.14 | 25465251 | 109644724 | tier1 | In-frame | 7368 | NA | 0.36565 |
| SKCM | TCGA-EE-A20I-06A | TCGA-EE-A20I | GPR158|KIAA1217 | GPR158 | KIAA1217 | 10 | 10 | 1 | 1 | 191 | 168 | 152 | 0.013 | 25510086 | 24802188 | tier1 | In-frame | 7367 | NA | 0.35855 |
| SARC | TCGA-DX-A23R-01A | TCGA-DX-A23R | CACNA1C|SLC6A15 | CACNA1C | SLC6A15 | 12 | 12 | 1 | -1 | 18 | 13 | 10 | 6.7 | 2229596 | 85264449 | tier1 | In-frame | 2858 | non-validated | 0.36299 |
| BRCA | TCGA-AN-A0FX-01A | TCGA-AN-A0FX | CACNA1C|WNT5B | CACNA1C | WNT5B | 12 | 12 | 1 | 1 | 20 | 10 | 9 | 1.1 | 2229596 | 1740464 | tier1 | CDS-5UTR | 2860 | NA | 0.36676 |
| PCPG | TCGA-RW-A68B-01A | TCGA-RW-A68B | CACNA1C|PIAS4 | CACNA1C | PIAS4 | 12 | 19 | 1 | 1 | 3 | 2 | 2 | 0.4 | 2162777 | 4033098 | tier1 | In-frame | 2857 | NA | 0.37903 |
| PRAD | TCGA-CH-5766-01A | TCGA-CH-5766 | CACNA1C|DDX55 | CACNA1C | DDX55 | 12 | 12 | 1 | 1 | 3 | 6 | 6 | 0.029 | 2711126 | 124104511 | tier4 | Out-of-frame | 2854 | NA | 0.36823 |
| PRAD | TCGA-EJ-A8FO-01A | TCGA-EJ-A8FO | CACNA1C|WWP2 | CACNA1C | WWP2 | 12 | 16 | 1 | 1 | 5 | 2 | 2 | 0.014 | 2229596 | 69820899 | tier1 | CDS-5UTR | 2861 | NA | 0.37683 |
| SARC | TCGA-DX-A23R-01A | TCGA-DX-A23R | CACNA1C|EEA1 | CACNA1C | EEA1 | 12 | 12 | 1 | -1 | 89 | 53 | 53 | 1.3 | 2229596 | 93220061 | tier1 | In-frame | 2856 | non-validated | 0.3771 |
| SARC | TCGA-DX-A23R-01A | TCGA-DX-A23R | CACNA1C|TSPAN8 | CACNA1C | TSPAN8 | 12 | 12 | 1 | -1 | 8 | 7 | 6 | 0.69 | 2229596 | 71676599 | tier1 | CDS-5UTR | 2859 | validated | 0.3637 |
| SKCM | TCGA-EE-A2MR-06A | TCGA-EE-A2MR | CACNA1C|DERA | CACNA1C | DERA | 12 | 12 | 1 | 1 | 34 | 42 | 40 | 0.018 | 2622150 | 16109870 | tier1 | In-frame | 2855 | NA | 0.36466 |
| STAD | TCGA-CD-A48C-01A | TCGA-CD-A48C | CACNA1C|CLEC2A | CACNA1C | CLEC2A | 12 | 12 | 1 | -1 | 6 | 79 | 72 | 0.42 | 2778201 | 10051575 | tier1 | Out-of-frame | 2853 | NA | 0.36495 |
| LGG | TCGA-DH-A66G-01A | TCGA-DH-A66G | KCNA6|C3AR1 | KCNA6 | C3AR1 | 12 | 12 | 1 | -1 | 15 | 1 | 1 | 0.036 | 4923944 | 8212791 | tier3 | 3UTR-5UTR | 8564 | NA | 0.35878 |
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