Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| UCS | TCGA-N6-A4VD-01A | TCGA-N6-A4VD | ALDOA|CCT5 | ALDOA | CCT5 | 16 | 5 | 1 | 1 | 2 | 12 | 10 | 0.092 | 30081734 | 10250033 | tier4 | 3UTR-5UTR | 813 | NA | 0.36615 |
| BRCA | TCGA-E2-A9RU-01A | TCGA-E2-A9RU | ITGB1|DYM | ITGB1 | DYM | 10 | 18 | -1 | -1 | 4 | 1 | 1 | 0.38 | 33214799 | 46798673 | tier3 | In-frame | 8395 | NA | 0.38 |
| BRCA | TCGA-E9-A229-01A | TCGA-E9-A229 | PCDH15|DUSP13 | PCDH15 | DUSP13 | 10 | 10 | -1 | -1 | 19 | 18 | 14 | 2 | 56077031 | 76863855 | tier1 | CDS-3UTR | 12386 | NA | 0.36751 |
| BRCA | TCGA-D8-A13Y-01A | TCGA-D8-A13Y | CTF1|BCL7C | CTF1 | BCL7C | 16 | 16 | 1 | -1 | 13 | 9 | 9 | 0.003 | 30910854 | 30900266 | tier1 | Out-of-frame | 4336 | NA | 0.34842 |
| SARC | TCGA-PC-A5DK-01A | TCGA-PC-A5DK | KLHL1|HNRNPF | KLHL1 | HNRNPF | 13 | 10 | -1 | -1 | 4 | 4 | 4 | 1.4 | 70370870 | 43892038 | tier1 | CDS-5UTR | 9055 | NA | 0.37216 |
| SARC | TCGA-KF-A41W-01A | TCGA-KF-A41W | TMCO3|PRKCZ | TMCO3 | PRKCZ | 13 | 1 | 1 | 1 | 3 | 5 | 5 | 0.88 | 114193822 | 2100957 | tier1 | Out-of-frame | 17905 | NA | 0 |
| SARC | TCGA-KF-A41W-01A | TCGA-KF-A41W | TMCO3|ATP11A | TMCO3 | ATP11A | 13 | 13 | 1 | 1 | 62 | 17 | 16 | 0.96 | 114193822 | 113439449 | tier1 | Out-of-frame | 17903 | NA | 0 |
| BRCA | TCGA-C8-A130-01A | TCGA-C8-A130 | TMCO3|KATNAL2 | TMCO3 | KATNAL2 | 13 | 18 | 1 | 1 | 9 | 4 | 4 | 1.1 | 114193822 | 44572828 | tier1 | Out-of-frame | 17904 | non-validated | 0 |
| LUSC | TCGA-98-A53C-01A | TCGA-98-A53C | TMCO3|SPACA7 | TMCO3 | SPACA7 | 13 | 13 | 1 | 1 | 28 | 16 | 14 | 0.086 | 114164739 | 113047335 | tier1 | In-frame | 17906 | NA | 0 |
| SARC | TCGA-K1-A42X-01A | TCGA-K1-A42X | LATS2|MYLK | LATS2 | MYLK | 13 | 3 | -1 | -1 | 165 | 93 | 91 | 2 | 21635485 | 123386034 | tier1 | 5UTR-CDS | 9247 | NA | 0.38854 |
| BRCA | TCGA-E2-A10F-01A | TCGA-E2-A10F | LPHN3|PPP3CA | LPHN3 | PPP3CA | 4 | 4 | 1 | -1 | 3 | 5 | 3 | 0.32 | 62679607 | 102030235 | tier1 | In-frame | 9449 | NA | 0.37209 |
| KIRC | TCGA-BP-5201-01A | TCGA-BP-5201 | LPHN3|AMTN | LPHN3 | AMTN | 4 | 4 | 1 | 1 | 7 | 4 | 4 | 3 | 62679607 | 71389585 | tier1 | Out-of-frame | 9446 | NA | 0.3501 |
| LGG | TCGA-DB-A64X-01A | TCGA-DB-A64X | LPHN3|DBX2 | LPHN3 | DBX2 | 4 | 12 | 1 | -1 | 3 | 1 | 1 | 2.4 | 62453158 | 45429897 | tier3 | Out-of-frame | 9448 | NA | 0.35452 |
| LGG | TCGA-HT-7477-01B | TCGA-HT-7477 | LPHN3|ST3GAL5 | LPHN3 | ST3GAL5 | 4 | 2 | 1 | -1 | 2 | 1 | 1 | 0.57 | 62453158 | 86090608 | tier3 | Out-of-frame | 9450 | NA | 0.34866 |
| LUSC | TCGA-92-7341-01A | TCGA-92-7341 | LPHN3|BBS9 | LPHN3 | BBS9 | 4 | 7 | 1 | 1 | 6 | 6 | 6 | 0.28 | 62383236 | 33644477 | tier1 | In-frame | 9447 | NA | 0.34926 |
| HNSC | TCGA-P3-A6T5-01A | TCGA-P3-A6T5 | PRSS23|LGALS12 | PRSS23 | LGALS12 | 11 | 11 | 1 | 1 | 19 | 15 | 13 | 0.074 | 86534635 | 63277935 | tier1 | Out-of-frame | 13661 | NA | 0.36417 |
| BLCA | TCGA-XF-A8HC-01A | TCGA-XF-A8HC | PIP4K2A|ITFG1 | PIP4K2A | ITFG1 | 10 | 16 | -1 | -1 | 2 | 1 | 1 | 1.6 | 22839588 | 47196575 | tier2 | Out-of-frame | 12863 | NA | 0.35793 |
| KIRC | TCGA-B0-4696-01A | TCGA-B0-4696 | PIP4K2A|ABLIM1 | PIP4K2A | ABLIM1 | 10 | 10 | -1 | -1 | 3 | 1 | 1 | 3.6 | 22880558 | 116361720 | tier2 | Out-of-frame | 12861 | NA | 0.3716 |
| KIRC | TCGA-A3-3328-01A | TCGA-A3-3328 | PIP4K2A|ARHGAP21 | PIP4K2A | ARHGAP21 | 10 | 10 | -1 | -1 | 5 | 7 | 6 | 0.28 | 22896856 | 24959326 | tier1 | In-frame | 12862 | NA | 0.37671 |
| KIRC | TCGA-CJ-5681-01A | TCGA-CJ-5681 | CRIM1|TACR1 | CRIM1 | TACR1 | 2 | 2 | 1 | -1 | 35 | 41 | 38 | 0.14 | 36749456 | 75347894 | tier1 | Out-of-frame | 4222 | non-validated | 0.37133 |
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