TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
LGG	TCGA-E1-5302-01A	TCGA-E1-5302	MTA2\|MS4A18	MTA2	MS4A18	11	11	-1	1	4	1	1	100	62368895	60504451	tier3	NA	10763	NA	0.37216
OV	TCGA-09-1665-01B	TCGA-09-1665	CHEK1\|EXOC6	CHEK1	EXOC6	11	10	1	1	2	2	2	0.13	125505428	94757231	tier2	Out-of-frame	3659	NA	0.38162
LUSC	TCGA-L3-A524-01A	TCGA-L3-A524	TMEM25\|CD3G	TMEM25	CD3G	11	11	1	1	33	18	17	3	118404844	118220458	tier1	In-frame	18015	NA	0
BRCA	TCGA-AN-A0XU-01A	TCGA-AN-A0XU	TMEM25\|CDH26	TMEM25	CDH26	11	20	1	1	4	1	1	0.085	118405070	58567433	tier4	Out-of-frame	18016	NA	0
BLCA	TCGA-BL-A0C8-01A	TCGA-BL-A0C8	KIAA0889\|RPS6KA5	KIAA0889	RPS6KA5	20	14	-1	-1	2	2	2	0.051	35431259	91444868	tier2	Out-of-frame	8806	non-validated	0.3846
SKCM	TCGA-FS-A1ZE-06A	TCGA-FS-A1ZE	KIAA0889\|RALY	KIAA0889	RALY	20	20	-1	1	28	19	17	0.022	35491061	32619328	tier1	CDS-5UTR	8805	NA	0.35847
BRCA	TCGA-A8-A06R-01A	TCGA-A8-A06R	PLCB3\|BAD	PLCB3	BAD	11	11	1	-1	3	7	6	0.015	64027706	64039275	tier4	Out-of-frame	12962	NA	0.37635
LGG	TCGA-DU-5870-01A	TCGA-DU-5870	ALDOA\|SLC1A3	ALDOA	SLC1A3	16	5	1	1	2	1	1	1.3	30081734	36606541	tier3	NA	824	non-validated	0.35725
KIRP	TCGA-A4-8515-01A	TCGA-A4-8515	ALDOA\|SIAE	ALDOA	SIAE	16	11	1	-1	2	48	37	0.49	30081734	124543777	tier3	3UTR-5UTR	822	NA	0.35052
KIRP	TCGA-P4-A5EB-01A	TCGA-P4-A5EB	ALDOA\|SIAE	ALDOA	SIAE	16	11	1	-1	2	29	21	0.49	30081734	124543777	tier4	3UTR-5UTR	823	NA	0.35052
LGG	TCGA-CS-6669-01A	TCGA-CS-6669	ALDOA\|SCN2A	ALDOA	SCN2A	16	2	1	1	2	23	15	0.22	30081734	166150541	tier3	3UTR-5UTR	821	NA	0.35794
BRCA	TCGA-D8-A1X6-01A	TCGA-D8-A1X6	ALDOA\|MPHOSPH8	ALDOA	MPHOSPH8	16	13	1	1	2	10	4	1.3	30081734	20233807	tier3	3UTR-CDS	818	NA	0.35858
BLCA	TCGA-FD-A3SM-01A	TCGA-FD-A3SM	ALDOA\|ANKS1A	ALDOA	ANKS1A	16	6	1	1	2	52	23	0.55	30081734	34977682	tier3	NA	811	NA	0.37422
BLCA	TCGA-FD-A62S-01A	TCGA-FD-A62S	ALDOA\|INTS9	ALDOA	INTS9	16	8	1	-1	3	1	1	0.24	30066648	28627543	tier3	5UTR-CDS	817	NA	0.3507
BRCA	TCGA-AR-A1AS-01A	TCGA-AR-A1AS	ALDOA\|FADS2	ALDOA	FADS2	16	11	1	1	2	21	1	1.1	30081734	61588853	tier3	3UTR-CDS	816	NA	0.35682
BRCA	TCGA-A2-A0CK-01A	TCGA-A2-A0CK	ALDOA\|NDUFV1	ALDOA	NDUFV1	16	11	1	1	2	31	24	1.7	30081734	67375697	tier3	NA	819	NA	0.35559
KIRP	TCGA-EV-5902-01A	TCGA-EV-5902	ALDOA\|DDX54	ALDOA	DDX54	16	12	1	-1	2	6	2	1.3	30081734	113621607	tier3	NA	815	NA	0.36834
PRAD	TCGA-KK-A8I6-01A	TCGA-KK-A8I6	ALDOA\|NDUFV1	ALDOA	NDUFV1	16	11	1	1	2	9	7	1.7	30081734	67375697	tier3	NA	820	NA	0.35559
READ	TCGA-AH-6549-01A	TCGA-AH-6549	ALDOA\|DDX27	ALDOA	DDX27	16	20	1	1	2	12	8	0.23	30081734	47849303	tier3	NA	814	NA	0.36226
THCA	TCGA-J8-A3O2-06A	TCGA-J8-A3O2	ALDOA\|ARFGEF2	ALDOA	ARFGEF2	16	20	1	1	2	8	7	2.7	30081734	47615777	tier3	3UTR-CDS	812	NA	0.36282

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