TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
BRCA	TCGA-LL-A441-01A	TCGA-LL-A441	PAK1\|ERG	PAK1	ERG	11	21	-1	-1	2	1	1	2.3	77184597	39956869	tier2	5UTR-5UTR	12202	NA	0.38572
SKCM	TCGA-GN-A26D-06A	TCGA-GN-A26D	PAK1\|PDGFD	PAK1	PDGFD	11	11	-1	-1	26	29	27	1.9	77184597	103818452	tier1	5UTR-CDS	12207	NA	0.37641
BRCA	TCGA-AQ-A04L-01B	TCGA-AQ-A04L	PAK1\|ARHGEF18	PAK1	ARHGEF18	11	19	-1	1	2	4	2	0.063	77043775	7521213	tier2	Out-of-frame	12198	NA	0.37554
BRCA	TCGA-XX-A899-01A	TCGA-XX-A899	PAK1\|CWF19L2	PAK1	CWF19L2	11	11	-1	-1	20	21	19	1.5	77184597	107326502	tier2	5UTR-CDS	12201	NA	0.37971
BRCA	TCGA-AN-A03Y-01A	TCGA-AN-A03Y	PAK1\|KCTD14	PAK1	KCTD14	11	11	-1	-1	107	42	40	0.78	77090286	77749804	tier1	CDS-5UTR	12203	NA	0.37752
BRCA	TCGA-BH-A201-01A	TCGA-BH-A201	PAK1\|MYO7A	PAK1	MYO7A	11	11	-1	1	11	27	23	0.023	77184597	76841635	tier2	5UTR-5UTR	12205	NA	0.38488
BRCA	TCGA-XX-A899-01A	TCGA-XX-A899	PAK1\|SHANK2	PAK1	SHANK2	11	11	-1	-1	48	44	43	0.098	77184597	70507783	tier1	5UTR-CDS	12209	NA	0.38168
BRCA	TCGA-E2-A1LS-01A	TCGA-E2-A1LS	PAK1\|THRSP	PAK1	THRSP	11	11	-1	1	18	55	51	0.013	77184597	77778705	tier1	5UTR-3UTR	12210	NA	0.37325
LUAD	TCGA-78-7161-01A	TCGA-78-7161	PAK1\|CNIH4	PAK1	CNIH4	11	1	-1	1	44	16	16	0.55	77103376	224553581	tier1	Out-of-frame	12200	NA	0.37326
LUSC	TCGA-56-A4BX-01A	TCGA-56-A4BX	PAK1\|LNP1	PAK1	LNP1	11	3	-1	1	42	29	28	0.29	77184597	100148541	tier1	5UTR-5UTR	12204	NA	0.37986
PRAD	TCGA-EJ-A46G-01A	TCGA-EJ-A46G	PAK1\|NARS2	PAK1	NARS2	11	11	-1	-1	22	22	20	1.2	77184597	78282489	tier1	5UTR-CDS	12206	NA	0.37743
STAD	TCGA-RD-A8N4-01A	TCGA-RD-A8N4	PAK1\|C11orf67	PAK1	C11orf67	11	11	-1	1	5	17	14	0.091	77085373	77580768	tier1	In-frame	12199	NA	0
PRAD	TCGA-KK-A6E8-01A	TCGA-KK-A6E8	ATM\|CARD18	ATM	CARD18	11	11	1	-1	14	2	2	1	108218092	105009805	tier1	In-frame	1652	NA	0.37703
BRCA	TCGA-EW-A1P1-01A	TCGA-EW-A1P1	GRIK4\|TMPRSS4	GRIK4	TMPRSS4	11	11	1	1	2	1	1	1	120776202	117965537	tier3	In-frame	7453	NA	0.36647
PRAD	TCGA-HC-8265-01A	TCGA-HC-8265	ST14\|APLP2	ST14	APLP2	11	11	1	1	11	6	5	0.011	130029955	129979324	tier1	In-frame	16926	NA	0
UCEC	TCGA-B5-A3S1-01A	TCGA-B5-A3S1	ST14\|APLP2	ST14	APLP2	11	11	1	1	16	15	13	0.011	130078579	130010293	tier1	In-frame	16925	NA	0
BRCA	TCGA-D8-A1JM-01A	TCGA-D8-A1JM	ST14\|BARX2	ST14	BARX2	11	11	1	1	19	21	18	0.79	130029955	129306646	tier1	Out-of-frame	16927	NA	0
BRCA	TCGA-AR-A256-01A	TCGA-AR-A256	ST14\|ST7	ST14	ST7	11	7	1	1	57	28	27	0.36	130029955	116739816	tier1	Out-of-frame	16928	non-validated	0
BRCA	TCGA-E2-A9RU-01A	TCGA-E2-A9RU	MTA2\|CDHR5	MTA2	CDHR5	11	11	-1	-1	11	4	4	0.4	62362736	618111	tier1	In-frame	10762	NA	0.37216
CESC	TCGA-VS-A952-01A	TCGA-VS-A952	MTA2\|UBXN1	MTA2	UBXN1	11	11	-1	-1	20	8	8	0.49	62364788	62446424	tier1	NA	10764	NA	0.37995

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