Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| CESC | TCGA-C5-A1BN-01B | TCGA-C5-A1BN | CAMK2G|C10orf55 | CAMK2G | C10orf55 | 10 | 10 | -1 | -1 | 7 | 2 | 1 | 1.2 | 75620588 | 75676399 | tier4 | CDS-5UTR | 2926 | non-validated | 0 |
| LIHC | TCGA-2Y-A9H0-01A | TCGA-2Y-A9H0 | CAMK2G|C10orf55 | CAMK2G | C10orf55 | 10 | 10 | -1 | -1 | 9 | 10 | 9 | 1.2 | 75601927 | 75676399 | tier1 | CDS-5UTR | 2925 | NA | 0 |
| UCEC | TCGA-5B-A90C-01A | TCGA-5B-A90C | HTR7|C10orf11 | HTR7 | C10orf11 | 10 | 10 | -1 | 1 | 3 | 4 | 4 | 1.3 | 92616890 | 77795766 | tier1 | In-frame | 8029 | NA | 0 |
| UCS | TCGA-N9-A4PZ-01A | TCGA-N9-A4PZ | HTR7|VAC14 | HTR7 | VAC14 | 10 | 16 | -1 | -1 | 18 | 17 | 14 | 0.35 | 92616890 | 70796928 | tier1 | In-frame | 8030 | NA | 0.36501 |
| LIHC | TCGA-RC-A6M4-01A | TCGA-RC-A6M4 | HABP2|LAPTM4B | HABP2 | LAPTM4B | 10 | 8 | 1 | 1 | 211 | 144 | 122 | 0.34 | 115312949 | 98817581 | tier1 | In-frame | 7579 | NA | 0.36664 |
| HNSC | TCGA-CR-6478-01A | TCGA-CR-6478 | HSD17B12|TP53I11 | HSD17B12 | TP53I11 | 11 | 11 | 1 | -1 | 8 | 4 | 3 | 0.32 | 43837941 | 44960741 | tier1 | CDS-5UTR | 7974 | NA | 0.34788 |
| KICH | TCGA-KL-8335-01A | TCGA-KL-8335 | HSD17B12|WT1 | HSD17B12 | WT1 | 11 | 11 | 1 | -1 | 5 | 9 | 8 | 0.94 | 43702537 | 32450165 | tier1 | In-frame | 7975 | NA | 0.3807 |
| SKCM | TCGA-EE-A2MK-06A | TCGA-EE-A2MK | SERPING1|CHD1 | SERPING1 | CHD1 | 11 | 5 | 1 | -1 | 2 | 3 | 2 | 1.6 | 57382326 | 98219587 | tier4 | NA | 15672 | NA | 0 |
| LIHC | TCGA-FV-A3R2-01A | TCGA-FV-A3R2 | SERPING1|CCT5 | SERPING1 | CCT5 | 11 | 5 | 1 | 1 | 2 | 1 | 1 | 0.29 | 57382320 | 10250033 | tier3 | 3UTR-5UTR | 15671 | non-validated | 0 |
| LAML | TCGA-AB-2857-03A | TCGA-AB-2857 | PTPRJ|C2CD2L | PTPRJ | C2CD2L | 11 | 11 | 1 | 1 | 2 | 1 | 1 | 0.031 | 48002560 | 118980814 | tier3 | In-frame | 13868 | NA | 0.37847 |
| LUAD | TCGA-38-6178-01A | TCGA-38-6178 | PTPRJ|FCER1G | PTPRJ | FCER1G | 11 | 1 | 1 | 1 | 9 | 8 | 7 | 0.046 | 48134535 | 161187776 | tier1 | In-frame | 13869 | NA | 0.37876 |
| PRAD | TCGA-XQ-A8TB-01A | TCGA-XQ-A8TB | PTPRJ|PPP2CB | PTPRJ | PPP2CB | 11 | 8 | 1 | -1 | 2 | 5 | 5 | 2 | 48168515 | 30648831 | tier3 | Out-of-frame | 13870 | NA | 0.3812 |
| SKCM | TCGA-GN-A26D-06A | TCGA-GN-A26D | ENDOD1|RAB30 | ENDOD1 | RAB30 | 11 | 11 | 1 | -1 | 21 | 41 | 40 | 0.14 | 94823391 | 82705164 | tier1 | In-frame | 5580 | NA | 0.35584 |
| UCEC | TCGA-AJ-A3IA-01A | TCGA-AJ-A3IA | ENDOD1|BBS1 | ENDOD1 | BBS1 | 11 | 11 | 1 | 1 | 3 | 4 | 3 | 0.16 | 94823391 | 66288741 | tier1 | In-frame | 5579 | NA | 0.33676 |
| STAD | TCGA-CG-4477-01A | TCGA-CG-4477 | SERPINH1|ZBTB44 | SERPINH1 | ZBTB44 | 11 | 11 | 1 | -1 | 48 | 19 | 17 | 1.1 | 75273364 | 130131824 | tier1 | 5UTR-5UTR | 15673 | NA | 0 |
| LIHC | TCGA-DD-AAE2-01A | TCGA-DD-AAE2 | CAPN5|HSD17B14 | CAPN5 | HSD17B14 | 11 | 19 | 1 | -1 | 169 | 131 | 121 | 0.67 | 76804859 | 49318398 | tier1 | In-frame | 2963 | NA | 0.36436 |
| LIHC | TCGA-FV-A3R2-01A | TCGA-FV-A3R2 | CAPN5|EPB41L1 | CAPN5 | EPB41L1 | 11 | 20 | 1 | 1 | 2 | 4 | 1 | 0.031 | 76837196 | 34818077 | tier4 | 3UTR-3UTR | 2962 | non-validated | 0.36991 |
| LUAD | TCGA-55-A492-01A | TCGA-55-A492 | CAPN5|PELI3 | CAPN5 | PELI3 | 11 | 11 | 1 | 1 | 3 | 1 | 1 | 0.44 | 76804859 | 66239840 | tier2 | In-frame | 2964 | NA | 0.36932 |
| SKCM | TCGA-YG-AA3P-06A | TCGA-YG-AA3P | CAPN5|XRRA1 | CAPN5 | XRRA1 | 11 | 11 | 1 | -1 | 2 | 1 | 1 | 3.1 | 76804859 | 74554498 | tier2 | Out-of-frame | 2965 | NA | 0.34589 |
| BRCA | TCGA-E2-A10E-01A | TCGA-E2-A10E | PAK1|PRSS23 | PAK1 | PRSS23 | 11 | 11 | -1 | 1 | 5 | 3 | 3 | 1.9 | 77103376 | 86534419 | tier1 | CDS-5UTR | 12208 | NA | 0.37762 |
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