Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
| Showing page 192 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BLCA | TCGA-FD-A3SM-01A | TCGA-FD-A3SM | GSN|HSPA8 | GSN | HSPA8 | 9 | 11 | 1 | -1 | 2 | 1 | 1 | 0.92 | 124095016 | 122933938 | tier3 | NA | 7499 | NA | 0.38332 |
| BRCA | TCGA-A7-A4SC-01A | TCGA-A7-A4SC | GSN|UVRAG | GSN | UVRAG | 9 | 11 | 1 | 1 | 2 | 14 | 6 | 0.44 | 124095120 | 75694431 | tier4 | 3UTR-CDS | 7502 | NA | 0.37468 |
| LUAD | TCGA-50-7109-01A | TCGA-50-7109 | GSN|FAR1 | GSN | FAR1 | 9 | 11 | 1 | 1 | 2 | 4 | 2 | 0.63 | 124095120 | 13744912 | tier3 | NA | 7496 | NA | 0.3767 |
| LUAD | TCGA-78-7542-01A | TCGA-78-7542 | GSN|HLA-F | GSN | HLA-F | 9 | 6 | 1 | 1 | 2 | 2 | 1 | 0.25 | 124095016 | 29691219 | tier3 | 3UTR-5UTR | 7498 | NA | 0.3756 |
| LUSC | TCGA-21-1076-01A | TCGA-21-1076 | GSN|UTRN | GSN | UTRN | 9 | 6 | 1 | 1 | 2 | 8 | 2 | 0.38 | 124095120 | 144665237 | tier3 | NA | 7501 | non-validated | 0.38067 |
| PRAD | TCGA-EJ-7794-01A | TCGA-EJ-7794 | GSN|TRA2A | GSN | TRA2A | 9 | 7 | 1 | -1 | 2 | 1 | 1 | 0.2 | 124095016 | 23571595 | tier3 | 3UTR-5UTR | 7500 | NA | 0.37732 |
| THCA | TCGA-E8-A417-01A | TCGA-E8-A417 | GSN|AKAP13 | GSN | AKAP13 | 9 | 15 | 1 | 1 | 2 | 1 | 1 | 0.034 | 124095120 | 86122161 | tier3 | 3UTR-CDS | 7494 | NA | 0.38535 |
| BLCA | TCGA-XF-A9SY-01A | TCGA-XF-A9SY | NR6A1|DEAF1 | NR6A1 | DEAF1 | 9 | 11 | -1 | -1 | 6 | 2 | 2 | 2.1 | 127533299 | 654051 | tier1 | Out-of-frame | 11729 | NA | 0.36533 |
| CESC | TCGA-VS-A9UT-01A | TCGA-VS-A9UT | NR6A1|GOLGA1 | NR6A1 | GOLGA1 | 9 | 9 | -1 | -1 | 4 | 1 | 1 | 0.027 | 127495587 | 127701145 | tier2 | CDS-5UTR | 11731 | NA | 0.36367 |
| SKCM | TCGA-ER-A19T-01A | TCGA-ER-A19T | NR6A1|GOLGA1 | NR6A1 | GOLGA1 | 9 | 9 | -1 | -1 | 5 | 3 | 3 | 0.027 | 127533299 | 127644848 | tier1 | Out-of-frame | 11730 | non-validated | 0.36367 |
| SARC | TCGA-DX-A8BS-01A | TCGA-DX-A8BS | SLC25A25|ADAMTSL3 | SLC25A25 | ADAMTSL3 | 9 | 15 | 1 | 1 | 3 | 4 | 4 | 0.97 | 130830859 | 84690162 | tier1 | Out-of-frame | 16101 | NA | 0 |
| OV | TCGA-24-2293-01A | TCGA-24-2293 | SLC25A25|CIZ1 | SLC25A25 | CIZ1 | 9 | 9 | 1 | -1 | 3 | 7 | 7 | 0.12 | 130830859 | 130932386 | tier1 | Out-of-frame | 16102 | NA | 0 |
| UCEC | TCGA-PG-A7D5-01A | TCGA-PG-A7D5 | SLC25A25|TCEB3 | SLC25A25 | TCEB3 | 9 | 1 | 1 | 1 | 2 | 1 | 1 | 0.2 | 130830859 | 24075511 | tier2 | In-frame | 16103 | NA | 0 |
| COAD | TCGA-AA-A01P-01A | TCGA-AA-A01P | LCN2|ZNFX1 | LCN2 | ZNFX1 | 9 | 20 | 1 | -1 | 2 | 34 | 8 | 0.083 | 130915734 | 47863418 | tier3 | 3UTR-CDS | 9254 | NA | 0.35583 |
| LUSC | TCGA-92-8065-01A | TCGA-92-8065 | LCN2|ZNFX1 | LCN2 | ZNFX1 | 9 | 20 | 1 | -1 | 2 | 28 | 21 | 0.083 | 130915734 | 47863418 | tier4 | 3UTR-CDS | 9253 | NA | 0.35583 |
| LUSC | TCGA-56-6546-01A | TCGA-56-6546 | INPP5E|SEC16A | INPP5E | SEC16A | 9 | 9 | -1 | -1 | 6 | 1 | 1 | 0.025 | 139328489 | 139352036 | tier3 | Out-of-frame | 8252 | NA | 0.36235 |
| HNSC | TCGA-CN-A498-01A | TCGA-CN-A498 | NOTCH1|MAPK1 | NOTCH1 | MAPK1 | 9 | 22 | -1 | -1 | 9 | 2 | 2 | 1.1 | 139405604 | 22143097 | tier1 | Out-of-frame | 11662 | NA | 0.39407 |
| KIRP | TCGA-BQ-7053-01A | TCGA-BQ-7053 | NOTCH1|HNF1B | NOTCH1 | HNF1B | 9 | 17 | -1 | -1 | 279 | 205 | 180 | 3.5 | 139397634 | 36093736 | tier1 | In-frame | 11660 | NA | 0.38462 |
| SARC | TCGA-DX-A6BG-01A | TCGA-DX-A6BG | NOTCH1|UHRF1BP1L | NOTCH1 | UHRF1BP1L | 9 | 12 | -1 | -1 | 2 | 1 | 1 | 1.7 | 139408962 | 100463947 | tier2 | Out-of-frame | 11663 | NA | 0.38573 |
| UCEC | TCGA-B5-A3S1-01A | TCGA-B5-A3S1 | NOTCH1|LCN10 | NOTCH1 | LCN10 | 9 | 9 | -1 | -1 | 3 | 2 | 2 | 2.9 | 139438476 | 139634500 | tier1 | Out-of-frame | 11661 | NA | 0.38554 |
|
Showing page 192 |
first page | previous page | next page | last page |
Copyright © 2020 University of Pennsylvania. All Rights Reserved.