Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LGG | TCGA-DU-A7TC-01A | TCGA-DU-A7TC | ATP6V1B2|KHDRBS2 | ATP6V1B2 | KHDRBS2 | 8 | 6 | 1 | -1 | 9 | 9 | 8 | 100 | 20070416 | 62611276 | tier1 | In-frame | 1755 | NA | 0.35894 |
| BRCA | TCGA-BH-A0B1-01A | TCGA-BH-A0B1 | CHRNB3|RB1CC1 | CHRNB3 | RB1CC1 | 8 | 8 | 1 | -1 | 45 | 36 | 35 | 1.9 | 42565577 | 53558427 | tier1 | Out-of-frame | 3706 | NA | 0.36529 |
| SKCM | TCGA-ER-A19T-01A | TCGA-ER-A19T | PXDNL|USP8 | PXDNL | USP8 | 8 | 15 | -1 | 1 | 26 | 14 | 13 | 3.5 | 52252184 | 50769473 | tier1 | Out-of-frame | 13982 | non-validated | 0 |
| BRCA | TCGA-C8-A26X-01A | TCGA-C8-A26X | WHSC1L1|FGFR1 | WHSC1L1 | FGFR1 | 8 | 8 | -1 | -1 | 2 | 4 | 4 | 1.1 | 38162105 | 38285611 | tier2 | In-frame | 19847 | NA | 0 |
| BRCA | TCGA-E2-A15A-01A | TCGA-E2-A15A | WHSC1L1|FGFR1 | WHSC1L1 | FGFR1 | 8 | 8 | -1 | -1 | 60 | 53 | 47 | 1.1 | 38239317 | 38315052 | tier1 | 5UTR-5UTR | 19848 | NA | 0 |
| LUAD | TCGA-44-4112-01A | TCGA-44-4112 | WHSC1L1|FGFR1 | WHSC1L1 | FGFR1 | 8 | 8 | -1 | -1 | 4 | 1 | 1 | 1.1 | 38239317 | 38315052 | tier3 | 5UTR-5UTR | 19846 | non-validated | 0 |
| OV | TCGA-24-1604-01A | TCGA-24-1604 | WHSC1L1|DUSP26 | WHSC1L1 | DUSP26 | 8 | 8 | -1 | -1 | 6 | 1 | 1 | 0.35 | 38162105 | 33455109 | tier2 | CDS-5UTR | 19845 | NA | 0 |
| COAD | TCGA-D5-6926-01A | TCGA-D5-6926 | WHSC1L1|ADAM18 | WHSC1L1 | ADAM18 | 8 | 8 | -1 | 1 | 70 | 134 | 120 | 0.038 | 38137058 | 39587417 | tier1 | Out-of-frame | 19837 | NA | 0 |
| BRCA | TCGA-EW-A2FR-01A | TCGA-EW-A2FR | WHSC1L1|NEGR1 | WHSC1L1 | NEGR1 | 8 | 1 | -1 | -1 | 3 | 6 | 6 | 0.32 | 38239317 | 72241980 | tier1 | 5UTR-CDS | 19853 | NA | 0 |
| OV | TCGA-29-1702-01A | TCGA-29-1702 | WHSC1L1|MUCL1 | WHSC1L1 | MUCL1 | 8 | 12 | -1 | 1 | 9 | 36 | 31 | 100 | 38239317 | 55248900 | tier1 | 5UTR-CDS | 19852 | NA | 0 |
| BRCA | TCGA-EW-A1PH-01A | TCGA-EW-A1PH | WHSC1L1|ADAM32 | WHSC1L1 | ADAM32 | 8 | 8 | -1 | 1 | 85 | 64 | 59 | 1.8 | 38138985 | 39131831 | tier1 | Out-of-frame | 19838 | validated | 0 |
| BRCA | TCGA-E2-A15A-01A | TCGA-E2-A15A | WHSC1L1|ANK1 | WHSC1L1 | ANK1 | 8 | 8 | -1 | -1 | 157 | 104 | 100 | 1.6 | 38205015 | 41615655 | tier1 | In-frame | 19839 | NA | 0 |
| BRCA | TCGA-BH-A1ES-01A | TCGA-BH-A1ES | WHSC1L1|CSMD1 | WHSC1L1 | CSMD1 | 8 | 8 | -1 | -1 | 6 | 3 | 2 | 2.3 | 38172165 | 2796266 | tier1 | Out-of-frame | 19841 | NA | 0 |
| BRCA | TCGA-AO-A1KT-01A | TCGA-AO-A1KT | WHSC1L1|GAB2 | WHSC1L1 | GAB2 | 8 | 11 | -1 | -1 | 41 | 48 | 46 | 0.34 | 38239317 | 77991947 | tier1 | 5UTR-CDS | 19850 | NA | 0 |
| BRCA | TCGA-OL-A66J-01A | TCGA-OL-A66J | WHSC1L1|PLEKHA2 | WHSC1L1 | PLEKHA2 | 8 | 8 | -1 | 1 | 5 | 4 | 4 | 0.31 | 38146005 | 38826939 | tier1 | In-frame | 19854 | NA | 0 |
| BRCA | TCGA-BH-A18U-01A | TCGA-BH-A18U | WHSC1L1|PSD3 | WHSC1L1 | PSD3 | 8 | 8 | -1 | -1 | 208 | 147 | 142 | 0.65 | 38146005 | 18513195 | tier1 | In-frame | 19855 | non-validated | 0 |
| BRCA | TCGA-BH-A1FB-01A | TCGA-BH-A1FB | WHSC1L1|SNX20 | WHSC1L1 | SNX20 | 8 | 16 | -1 | -1 | 29 | 51 | 44 | 0.015 | 38239317 | 50711446 | tier1 | 5UTR-5UTR | 19857 | NA | 0 |
| BRCA | TCGA-EW-A1IX-01A | TCGA-EW-A1IX | WHSC1L1|ZMAT4 | WHSC1L1 | ZMAT4 | 8 | 8 | -1 | -1 | 177 | 81 | 76 | 0.48 | 38172165 | 40389757 | tier2 | Out-of-frame | 19859 | NA | 0 |
| HNSC | TCGA-D6-A4Z9-01A | TCGA-D6-A4Z9 | WHSC1L1|LETM2 | WHSC1L1 | LETM2 | 8 | 8 | -1 | 1 | 3 | 1 | 1 | 0.12 | 38239317 | 38245468 | tier3 | 5UTR-5UTR | 19851 | NA | 0 |
| LIHC | TCGA-G3-A25X-01A | TCGA-G3-A25X | WHSC1L1|ZNF721 | WHSC1L1 | ZNF721 | 8 | 4 | -1 | -1 | 4 | 1 | 1 | 0.071 | 38239317 | 438221 | tier3 | 5UTR-5UTR | 19860 | NA | 0 |
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