Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| KIRC | TCGA-CJ-6032-01A | TCGA-CJ-6032 | IGFBP3|CLCN3 | IGFBP3 | CLCN3 | 7 | 4 | -1 | 1 | 2 | 29 | 14 | 2.1 | 45951958 | 170623929 | tier4 | NA | 8117 | NA | 0.37106 |
| STAD | TCGA-VQ-A925-01A | TCGA-VQ-A925 | TRIM4|ZCWPW1 | TRIM4 | ZCWPW1 | 7 | 7 | -1 | -1 | 4 | 15 | 11 | 3.4 | 99516632 | 100007167 | tier1 | Out-of-frame | 18650 | NA | 0 |
| BRCA | TCGA-BH-A1F6-01A | TCGA-BH-A1F6 | TRIM4|TAF6 | TRIM4 | TAF6 | 7 | 7 | -1 | -1 | 14 | 11 | 10 | 0.33 | 99500841 | 99707696 | tier1 | Out-of-frame | 18649 | NA | 0 |
| LUSC | TCGA-94-7943-01A | TCGA-94-7943 | TLK2|BCAS3 | TLK2 | BCAS3 | 17 | 17 | 1 | 1 | 3 | 6 | 6 | 0.2 | 60558567 | 58945937 | tier1 | Out-of-frame | 17858 | validated | 0 |
| UCEC | TCGA-BK-A26L-01A | TCGA-BK-A26L | NLGN4X|DMD | NLGN4X | DMD | X | X | -1 | -1 | 10 | 17 | 17 | 0.85 | 5947321 | 31792309 | tier1 | In-frame | 11595 | non-validated | 0.36944 |
| BRCA | TCGA-E2-A14T-01A | TCGA-E2-A14T | CASK|GLIPR1L1 | CASK | GLIPR1L1 | X | 12 | -1 | 1 | 12 | 3 | 2 | 1.2 | 41782183 | 75737473 | tier1 | Out-of-frame | 3016 | NA | 0.37698 |
| BRCA | TCGA-A8-A08L-01A | TCGA-A8-A08L | CASK|EYA2 | CASK | EYA2 | X | 20 | -1 | 1 | 3 | 2 | 2 | 0.019 | 41598637 | 45618640 | tier1 | CDS-5UTR | 3015 | non-validated | 0.38064 |
| PRAD | TCGA-ZG-A9L1-01A | TCGA-ZG-A9L1 | CASK|C6orf70 | CASK | C6orf70 | X | 6 | -1 | 1 | 14 | 4 | 4 | 2.3 | 41712368 | 170168199 | tier1 | Out-of-frame | 3014 | NA | 0 |
| BLCA | TCGA-BT-A20Q-01A | TCGA-BT-A20Q | KDM6A|KAL1 | KDM6A | KAL1 | X | X | 1 | -1 | 4 | 7 | 6 | 0.38 | 44945224 | 8591711 | tier1 | Out-of-frame | 8708 | validated | 0.35259 |
| LUAD | TCGA-86-7954-01A | TCGA-86-7954 | KDM6A|METTL20 | KDM6A | METTL20 | X | 12 | 1 | 1 | 67 | 90 | 81 | 0.11 | 44733233 | 31814775 | tier1 | CDS-5UTR | 8709 | NA | 0 |
| SARC | TCGA-DX-A3UC-01A | TCGA-DX-A3UC | KDM6A|RPS6KA3 | KDM6A | RPS6KA3 | X | X | 1 | -1 | 9 | 3 | 3 | 0.48 | 44950109 | 20252932 | tier1 | Out-of-frame | 8711 | NA | 0.3812 |
| LUAD | TCGA-49-AARO-01A | TCGA-49-AARO | KDM6A|DMD | KDM6A | DMD | X | X | 1 | -1 | 4 | 3 | 3 | 0.85 | 44833960 | 31497220 | tier1 | In-frame | 8706 | NA | 0.368 |
| ACC | TCGA-OR-A5KV-01A | TCGA-OR-A5KV | KDM6A|FUNDC1 | KDM6A | FUNDC1 | X | X | 1 | -1 | 263 | 158 | 143 | 0.25 | 44833960 | 44401347 | tier1 | Out-of-frame | 8707 | NA | 0.33314 |
| BRCA | TCGA-BH-A0BF-01A | TCGA-BH-A0BF | KDM6A|PDHX | KDM6A | PDHX | X | 11 | 1 | 1 | 4 | 7 | 7 | 0.15 | 44950109 | 34952951 | tier1 | Out-of-frame | 8710 | NA | 0.34951 |
| HNSC | TCGA-BA-A8YP-01A | TCGA-BA-A8YP | KDM6A|DLL1 | KDM6A | DLL1 | X | 6 | 1 | -1 | 7 | 6 | 6 | 0.67 | 44833960 | 170595386 | tier1 | Out-of-frame | 8705 | NA | 0.36886 |
| LUAD | TCGA-71-6725-01A | TCGA-71-6725 | KDM6A|DCAF7 | KDM6A | DCAF7 | X | 17 | 1 | 1 | 14 | 12 | 11 | 0.38 | 44733233 | 61655831 | tier2 | In-frame | 8704 | NA | 0 |
| LUAD | TCGA-71-6725-01A | TCGA-71-6725 | KDM6A|ZNF674 | KDM6A | ZNF674 | X | X | 1 | -1 | 10 | 8 | 8 | 0.071 | 44733233 | 46360770 | tier2 | Out-of-frame | 8712 | NA | 0.34019 |
| PRAD | TCGA-EJ-8469-01A | TCGA-EJ-8469 | KDM6A|ARHGAP6 | KDM6A | ARHGAP6 | X | X | 1 | -1 | 53 | 33 | 32 | 0.089 | 44918711 | 11272827 | tier1 | In-frame | 8703 | NA | 0.34843 |
| PRAD | TCGA-G9-7523-01A | TCGA-G9-7523 | HDAC8|PHKA1 | HDAC8 | PHKA1 | X | X | -1 | -1 | 8 | 8 | 8 | 0.51 | 71787739 | 71804152 | tier1 | Out-of-frame | 7634 | NA | 0.37052 |
| CESC | TCGA-EK-A2PI-01A | TCGA-EK-A2PI | TAF1|ITGB1BP2 | TAF1 | ITGB1BP2 | X | X | 1 | 1 | 5 | 4 | 4 | 0.032 | 70588020 | 70523477 | tier1 | Out-of-frame | 17311 | NA | 0 |
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