TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
UCEC	TCGA-BK-A139-01A	TCGA-BK-A139	SLC2A12\|SGK1	SLC2A12	SGK1	6	6	-1	-1	3	12	11	0.15	134349519	134583286	tier1	Out-of-frame	16129	non-validated	0
BLCA	TCGA-GD-A2C5-01A	TCGA-GD-A2C5	SHPRH\|NDUFS5	SHPRH	NDUFS5	6	1	-1	1	323	264	221	0.49	146285293	39494395	tier1	5UTR-5UTR	15892	non-validated	0
BLCA	TCGA-GC-A4ZW-01A	TCGA-GC-A4ZW	SHPRH\|RCL1	SHPRH	RCL1	6	9	-1	1	13	6	6	1.9	146273485	4860125	tier1	Out-of-frame	15894	NA	0
LIHC	TCGA-DD-A113-01A	TCGA-DD-A113	SHPRH\|PKIB	SHPRH	PKIB	6	6	-1	1	6	6	4	0.49	146240484	123038932	tier1	Out-of-frame	15893	NA	0
LIHC	TCGA-BC-A8YO-01A	TCGA-BC-A8YO	SLC22A3\|CYP20A1	SLC22A3	CYP20A1	6	2	1	1	5	5	5	0.39	160864774	204110569	tier1	Out-of-frame	16076	NA	0
GBM	TCGA-06-0744-01A	TCGA-06-0744	EGFR\|ERP44	EGFR	ERP44	7	9	1	-1	11	34	32	0.49	55087058	102784508	tier1	In-frame	5373	non-validated	0.3879
GBM	TCGA-19-2624-01A	TCGA-19-2624	EGFR\|GNS	EGFR	GNS	7	12	1	-1	24	47	37	0.51	55240817	65110599	tier1	Out-of-frame	5374	non-validated	0.38887
BLCA	TCGA-GC-A6I3-01A	TCGA-GC-A6I3	EGFR\|GRB10	EGFR	GRB10	7	7	1	-1	4	5	5	0.55	55087058	50742355	tier1	In-frame	5375	NA	0.39182
GBM	TCGA-19-2624-01A	TCGA-19-2624	EGFR\|PPM1H	EGFR	PPM1H	7	12	1	-1	32	135	99	0.047	55087058	63195940	tier1	Out-of-frame	5377	non-validated	0.3894
GBM	TCGA-06-0750-01A	TCGA-06-0750	EGFR\|SEPT14	EGFR	SEPT14	7	7	1	-1	6	229	196	1.3	55268106	55863785	tier1	In-frame	5378	NA	0
GBM	TCGA-27-1837-01A	TCGA-27-1837	EGFR\|SEPT14	EGFR	SEPT14	7	7	1	-1	22	490	434	1.3	55268106	55863785	tier1	In-frame	5379	NA	0
GBM	TCGA-28-1747-01C	TCGA-28-1747	EGFR\|SEPT14	EGFR	SEPT14	7	7	1	-1	13	108	94	1.3	55268106	55863785	tier1	In-frame	5380	NA	0
GBM	TCGA-28-2513-01A	TCGA-28-2513	EGFR\|SEPT14	EGFR	SEPT14	7	7	1	-1	34	992	844	1.3	55268106	55863785	tier1	In-frame	5381	NA	0
GBM	TCGA-32-5222-01A	TCGA-32-5222	EGFR\|SEPT14	EGFR	SEPT14	7	7	1	-1	17	840	587	1.3	55268106	55863785	tier1	In-frame	5382	NA	0
HNSC	TCGA-CV-6941-01A	TCGA-CV-6941	EGFR\|ACADM	EGFR	ACADM	7	1	1	1	120	60	48	0.26	55087058	76198329	tier1	In-frame	5371	NA	0.39076
HNSC	TCGA-BA-6872-01A	TCGA-BA-6872	EGFR\|DYM	EGFR	DYM	7	18	1	-1	10	5	5	0.08	55087058	46918015	tier1	Out-of-frame	5372	non-validated	0.3888
HNSC	TCGA-CR-7368-01A	TCGA-CR-7368	EGFR\|SEPT14	EGFR	SEPT14	7	7	1	-1	2	6	6	1.3	55087058	55874951	tier3	In-frame	5383	NA	0
LGG	TCGA-DU-6406-01A	TCGA-DU-6406	EGFR\|SEPT14	EGFR	SEPT14	7	7	1	-1	470	2978	2490	1.3	55268106	55863785	tier1	In-frame	5384	NA	0
LIHC	TCGA-2Y-A9H0-01A	TCGA-2Y-A9H0	EGFR\|LYST	EGFR	LYST	7	1	1	-1	13	6	6	0.11	55087058	235996967	tier1	CDS-5UTR	5376	NA	0.39146
LUSC	TCGA-85-8351-01A	TCGA-85-8351	EGFR\|TEAD2	EGFR	TEAD2	7	19	1	-1	17	12	12	0.07	55087058	49862756	tier1	In-frame	5385	NA	0.39103

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