Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-E9-A1NA-01A | TCGA-E9-A1NA | FARS2|RREB1 | FARS2 | RREB1 | 6 | 6 | 1 | 1 | 3 | 3 | 3 | 2 | 5545573 | 7211037 | tier1 | Out-of-frame | 6257 | NA | 0.3676 |
| GBM | TCGA-41-5651-01A | TCGA-41-5651 | FARS2|BATF2 | FARS2 | BATF2 | 6 | 11 | 1 | -1 | 2 | 1 | 1 | 0.49 | 5613553 | 64757284 | tier3 | Out-of-frame | 6249 | non-validated | 0.3576 |
| HNSC | TCGA-CV-6935-01A | TCGA-CV-6935 | FARS2|PHACTR1 | FARS2 | PHACTR1 | 6 | 6 | 1 | 1 | 2 | 1 | 1 | 0.09 | 5613553 | 12718931 | tier2 | CDS-5UTR | 6255 | NA | 0.35107 |
| LGG | TCGA-FG-7636-01A | TCGA-FG-7636 | FARS2|GCNT2 | FARS2 | GCNT2 | 6 | 6 | 1 | 1 | 4 | 3 | 3 | 0.3 | 5613553 | 10621584 | tier1 | Out-of-frame | 6252 | NA | 0.34055 |
| SARC | TCGA-K1-A42X-02A | TCGA-K1-A42X | FARS2|KPNA4 | FARS2 | KPNA4 | 6 | 3 | 1 | -1 | 3 | 1 | 1 | 0.048 | 5261893 | 160254628 | tier2 | 5UTR-CDS | 6253 | NA | 0.36311 |
| SKCM | TCGA-D3-A2J9-06A | TCGA-D3-A2J9 | FARS2|LYRM4 | FARS2 | LYRM4 | 6 | 6 | 1 | -1 | 14 | 10 | 9 | 0.028 | 5613553 | 5216971 | tier1 | In-frame | 6254 | NA | 0.34592 |
| UCEC | TCGA-AJ-A3TW-01A | TCGA-AJ-A3TW | FARS2|DTNBP1 | FARS2 | DTNBP1 | 6 | 6 | 1 | -1 | 9 | 6 | 5 | 0.13 | 5613553 | 15593312 | tier1 | In-frame | 6251 | NA | 0.35511 |
| PCPG | TCGA-TT-A6YN-01A | TCGA-TT-A6YN | GFRA3|TTC8 | GFRA3 | TTC8 | 5 | 14 | -1 | 1 | 524 | 395 | 365 | 0.046 | 137588976 | 89341370 | tier1 | In-frame | 7045 | NA | 0.35664 |
| OV | TCGA-13-0924-01A | TCGA-13-0924 | KLHL3|C16orf45 | KLHL3 | C16orf45 | 5 | 16 | -1 | 1 | 2 | 1 | 1 | 0.16 | 137071322 | 15609162 | tier2 | Out-of-frame | 9070 | NA | 0 |
| BRCA | TCGA-A8-A07U-01A | TCGA-A8-A07U | SCUBE3|ANKS1A | SCUBE3 | ANKS1A | 6 | 6 | 1 | 1 | 6 | 4 | 3 | 0.48 | 35196516 | 35050468 | tier1 | Out-of-frame | 15444 | NA | 0 |
| BRCA | TCGA-AR-A1AH-01A | TCGA-AR-A1AH | SCUBE3|ANKS1A | SCUBE3 | ANKS1A | 6 | 6 | 1 | 1 | 3 | 1 | 1 | 0.48 | 35196516 | 35085023 | tier3 | NA | 15445 | NA | 0 |
| KIRC | TCGA-A3-3313-01A | TCGA-A3-3313 | CYP39A1|LEMD2 | CYP39A1 | LEMD2 | 6 | 6 | -1 | -1 | 36 | 26 | 21 | 100 | 46620143 | 33748930 | tier1 | Out-of-frame | 4503 | NA | 0.34535 |
| PRAD | TCGA-EJ-8468-01A | TCGA-EJ-8468 | CYP39A1|FGGY | CYP39A1 | FGGY | 6 | 1 | -1 | 1 | 7 | 3 | 3 | 1.9 | 46609900 | 60223603 | tier1 | Out-of-frame | 4502 | NA | 0.34554 |
| SARC | TCGA-DX-A7EI-01A | TCGA-DX-A7EI | CYP39A1|VPS33A | CYP39A1 | VPS33A | 6 | 12 | -1 | -1 | 6 | 5 | 5 | 0.26 | 46598700 | 122745994 | tier1 | Out-of-frame | 4504 | NA | 0.3574 |
| BRCA | TCGA-A7-A5ZV-01A | TCGA-A7-A5ZV | PHIP|INADL | PHIP | INADL | 6 | 1 | -1 | 1 | 10 | 9 | 8 | 0.042 | 79707131 | 62271120 | tier1 | Out-of-frame | 12745 | NA | 0.3741 |
| COAD | TCGA-AA-A02K-01A | TCGA-AA-A02K | PHIP|HMGN3 | PHIP | HMGN3 | 6 | 6 | -1 | -1 | 3 | 5 | 2 | 2.2 | 79752560 | 79924739 | tier1 | In-frame | 12744 | NA | 0.3612 |
| LUAD | TCGA-55-6712-01A | TCGA-55-6712 | PHIP|FTO | PHIP | FTO | 6 | 16 | -1 | 1 | 47 | 13 | 11 | 0.057 | 79752560 | 54145674 | tier1 | Out-of-frame | 12743 | NA | 0.36242 |
| SARC | TCGA-DX-A7EN-01A | TCGA-DX-A7EN | PHIP|MYO6 | PHIP | MYO6 | 6 | 6 | -1 | 1 | 2 | 4 | 3 | 0.51 | 79770195 | 76527218 | tier2 | CDS-5UTR | 12746 | NA | 0.37684 |
| UVM | TCGA-VD-A8KJ-01A | TCGA-VD-A8KJ | C6orf192|TRMT11 | C6orf192 | TRMT11 | 6 | 6 | -1 | 1 | 24 | 17 | 17 | 0.57 | 133118121 | 126342306 | tier1 | Out-of-frame | 2760 | NA | 0 |
| HNSC | TCGA-BA-4078-01A | TCGA-BA-4078 | SLC2A12|SGK1 | SLC2A12 | SGK1 | 6 | 6 | -1 | -1 | 33 | 26 | 19 | 0.15 | 134373516 | 134583286 | tier1 | Out-of-frame | 16128 | NA | 0 |
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